Plant Circular RNA Database

Detail information of Os01g0783200_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os01g0783200_circ_g.1
					
						ID in PlantcircBase
						osa_circ_004236
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 33187444-33190052  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os01g0783200						
					
						Parent gene annotation
						
							Similar to Diacylglycerol kinase. (Os01t0783200-01);Similar to D
iacylglycerol kinase. (Os01t0783200-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os01g0783200_circ_g.2 Os01g0783200_circ_g.3 Os01g0783200_circ_g.4 Os01g0783200_circ_g.5 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0783200-02:8
Os01t0783200-01:8

General Information
CircRNA Name	Os01g0783200_circ_g.1
ID in PlantcircBase	osa_circ_004236
Alias	NA
Organism	Oryza sativa
Position	chr1: 33187444-33190052 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os01g0783200
Parent gene annotation	Similar to Diacylglycerol kinase. (Os01t0783200-01);Similar to D iacylglycerol kinase. (Os01t0783200-02)
Parent gene strand	-
Alternative splicing	Os01g0783200_circ_g.2 Os01g0783200_circ_g.3 Os01g0783200_circ_g.4 Os01g0783200_circ_g.5
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0783200-02:8 Os01t0783200-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CAAAACAAACCTACCTATCAATTTTCATCTCTTTCGCTTGTCTTACTGACTGTAGAAACGATAG
AACTGACTTTTCATCTGTTCCAGGATTTCTCTTCCCctgagcaagacgagtgccatggcctttt
ggagatagcaacacaagtccatgccaagcatctttaaaacccacaatctccagaagaccatcat
ccacaagt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGAGCAAGACGAGTGCCATGGCCTTTTGGAGATAGCAACACAAGTCCATGCCAAGCATCTTTA
AAACCCACAATCTCCAGAAGACCATCATCCACAAGTGGAGGCATTACTAAATCCCTCTGCAAGA
ATAGTTTTGTATTGTTAAAAGATCTTTAAATAAAGGAAATTTATACTACCACAGTCTTTTGTTG
TGCAATGAATAGCATCAGCGTTATGTATTGAACTCACTTTTCTTTGTTTTCTCTCACTTGGTGT
TCCCCATGGATTCAGTCCACCGGAGAAGCTGGGTAAATTCAGACAAACAATGGACCGGATACTG
CATTTGTGTAAAAATTTGTTCAGACCATCATGGATCAGCATCAGATATTGAAGCATTCTAACAT
GCCGCCAATAGCATTTAATGGTTTAAAGTTAACAGTATAAGTATCTAGCACACCAACTATAGTG
CACACAAAATTGAGAATTTTTGTGCCCGACAGATATATAGAACCCATTCTACCCCCATCCCAAC
TCCTGGGGCTGTGACTCAAGAGTAAGAGCCCGTGCTCCTTTTAAACATCAGATTCCATCAATGC
TCAAATATAAGCACATAACTCTAAAATGTAATATGCAAGGCCGGTTTGATATGGAAGGAGGGCG
TATAGCTTACCTCTGTGGAATTTCCAATGTTTCCCATTTTCCAGATTTCTTCATTATCTTTACT
TTTGAAAGGTGCGCAATGTTCCTATGGTGCAGCAAAAGGTATATGAAAAATTATGAGACCTACA
ATGTCATGAACAAAGCATGCAGATTTTCCTGAAAGTATTGAGATGATTTTTCAAAATGATGCAA
AGACTAACTTAGTATCGATAATGTAATTTACCGTGACATTGGATGACATAGGGATGCACAGAAC
CATCCTTGCGTGCATGCCAGCTTCAAATATGTTTTCTGCACTAAAGATCATAAAAATTATTGGT
TTCTGTACTTCTGAATATGCTCATAAAGGAGTGACATCTTTGAGAGAGGTTAGAGGAAAGCAGG
AGGAATAAAATCTTTTAAAAAATATGATCGGTATCTTAGTTCACCTGATTAGACAACTGGTTTT
TGAATTTTTCTGGATGCAATTTCCTCTCAGAATGAAAGGCATATGACACCTGAGCATCCATTCC
TGTGAAATAAACAAGTGAATTTCAACCTTTGGCTGTTGAACTAACCAATAAATTGTGTCCTACT
GTTTTCTCCTAGCCTTGGCAGAAAAGCAAGGTTCACCCAAAAAAAAAATTGATCAACAGAACAA
AAGGTACAACTTTCAACAGGCAACTCACCCATACTGAAGTAATTCCAGAATCCCCCACGAAACG
TGCAAGAATATTCCTGCAGATGTATTGAAAACAAGGTTATACATTCAGCACGTTGCATAATTCA
AGAGGTTCATTTACTCATATTCTATATTAACATGTAAATATTCATTTTTTGACTTTTTGTATGG
AAAAACATAAGGCACAAATATGTTCTAAAGAGAACACATAATGCAAACCAATTACTCCCTCCGT
TCCAAAATATAACAGCTTCTCCACCAACATTCTCTTCCCGGCCAATCACAACCTTCCCTCATTT
AATTCTTCCTACTTTCTTATACCTGTGTGCAACCCTAAAAATCCTTATATTCTAGGACGGAGGT
AGTAGTTACTGAGGTAGATCAAAGAAGGACGTCGACCAAATTTATCAAGCAGGGGAGGAAAAAA
CAGTTTACAAATCAATCACACGGTTGCCAAGATACAACACATGCCCCACTCATAAGTTATAACA
GCAGCCCCAGCTTGGCAGCTCTACTTCTGGGCGCTCTAGGATAAAACACCACACAGGAGCAGGG
CATCAGGCAATTATTGACCACTCCTGTGTGATTGCACTACATAGCTCTGATGCCCCTGATCTAA
GTGATGAAAATGAATTGGAAAAATGTCTGGATTGAATATGCAGAAAATCTAAGTGATGGAAGTG
TGGAACAGTGCAGAACCACAGGCAAACAAGCGTAAGTTTGGATATACGCTTGCCACTGATGCAT
GCTATACACTCTTTATATTATTTATATATACAATCAACACCATTTCAGATATTCGTATAACGTG
CCTCAGCCACATGGAAACTAAACTGTGTGAAGGTGACTAATTGTGTTATTTCCATAAAAGGGTA
CTTTAAAAAAATGCAAAAGGGGCTTCGCAGAGCCCAAAAAAACAGATAAACAGTCCAACTCAGT
ATATAATTTGAGTCTTCTAACTTAATTTGCATACATTAAATTAGTCCAAGTCAATTGTAGTTAC
CTTATCTTGTGGATTGTTTGGCACACGGTGAAACGCGTGCAGCGAATGAGGCAAATCCAAAGGA
GCAATTGGATCACAAGTAGAACTTTTTGGGCTTTCCATTTTCATGACAATGTGCCAACTGAAAT
ATTTCAATAAGTACCAATCAACATCCGTATGGAGATTACAGATAGAAGGTGTGAACAACAATGG
AGATTGTACCTTGCAAAACAAACCTACCTATCAATTTTCATCTCTTTCGCTTGTCTTACTGACT
GTAGAAACGATAGAACTGACTTTTCATCTGTTCCAGGATTTCTCTTCCC
						
					

			
		

Sequences
Splice junction sequence	CAAAACAAACCTACCTATCAATTTTCATCTCTTTCGCTTGTCTTACTGACTGTAGAAACGATAG AACTGACTTTTCATCTGTTCCAGGATTTCTCTTCCCctgagcaagacgagtgccatggcctttt ggagatagcaacacaagtccatgccaagcatctttaaaacccacaatctccagaagaccatcat ccacaagt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGAGCAAGACGAGTGCCATGGCCTTTTGGAGATAGCAACACAAGTCCATGCCAAGCATCTTTA AAACCCACAATCTCCAGAAGACCATCATCCACAAGTGGAGGCATTACTAAATCCCTCTGCAAGA ATAGTTTTGTATTGTTAAAAGATCTTTAAATAAAGGAAATTTATACTACCACAGTCTTTTGTTG TGCAATGAATAGCATCAGCGTTATGTATTGAACTCACTTTTCTTTGTTTTCTCTCACTTGGTGT TCCCCATGGATTCAGTCCACCGGAGAAGCTGGGTAAATTCAGACAAACAATGGACCGGATACTG CATTTGTGTAAAAATTTGTTCAGACCATCATGGATCAGCATCAGATATTGAAGCATTCTAACAT GCCGCCAATAGCATTTAATGGTTTAAAGTTAACAGTATAAGTATCTAGCACACCAACTATAGTG CACACAAAATTGAGAATTTTTGTGCCCGACAGATATATAGAACCCATTCTACCCCCATCCCAAC TCCTGGGGCTGTGACTCAAGAGTAAGAGCCCGTGCTCCTTTTAAACATCAGATTCCATCAATGC TCAAATATAAGCACATAACTCTAAAATGTAATATGCAAGGCCGGTTTGATATGGAAGGAGGGCG TATAGCTTACCTCTGTGGAATTTCCAATGTTTCCCATTTTCCAGATTTCTTCATTATCTTTACT TTTGAAAGGTGCGCAATGTTCCTATGGTGCAGCAAAAGGTATATGAAAAATTATGAGACCTACA ATGTCATGAACAAAGCATGCAGATTTTCCTGAAAGTATTGAGATGATTTTTCAAAATGATGCAA AGACTAACTTAGTATCGATAATGTAATTTACCGTGACATTGGATGACATAGGGATGCACAGAAC CATCCTTGCGTGCATGCCAGCTTCAAATATGTTTTCTGCACTAAAGATCATAAAAATTATTGGT TTCTGTACTTCTGAATATGCTCATAAAGGAGTGACATCTTTGAGAGAGGTTAGAGGAAAGCAGG AGGAATAAAATCTTTTAAAAAATATGATCGGTATCTTAGTTCACCTGATTAGACAACTGGTTTT TGAATTTTTCTGGATGCAATTTCCTCTCAGAATGAAAGGCATATGACACCTGAGCATCCATTCC TGTGAAATAAACAAGTGAATTTCAACCTTTGGCTGTTGAACTAACCAATAAATTGTGTCCTACT GTTTTCTCCTAGCCTTGGCAGAAAAGCAAGGTTCACCCAAAAAAAAAATTGATCAACAGAACAA AAGGTACAACTTTCAACAGGCAACTCACCCATACTGAAGTAATTCCAGAATCCCCCACGAAACG TGCAAGAATATTCCTGCAGATGTATTGAAAACAAGGTTATACATTCAGCACGTTGCATAATTCA AGAGGTTCATTTACTCATATTCTATATTAACATGTAAATATTCATTTTTTGACTTTTTGTATGG AAAAACATAAGGCACAAATATGTTCTAAAGAGAACACATAATGCAAACCAATTACTCCCTCCGT TCCAAAATATAACAGCTTCTCCACCAACATTCTCTTCCCGGCCAATCACAACCTTCCCTCATTT AATTCTTCCTACTTTCTTATACCTGTGTGCAACCCTAAAAATCCTTATATTCTAGGACGGAGGT AGTAGTTACTGAGGTAGATCAAAGAAGGACGTCGACCAAATTTATCAAGCAGGGGAGGAAAAAA CAGTTTACAAATCAATCACACGGTTGCCAAGATACAACACATGCCCCACTCATAAGTTATAACA GCAGCCCCAGCTTGGCAGCTCTACTTCTGGGCGCTCTAGGATAAAACACCACACAGGAGCAGGG CATCAGGCAATTATTGACCACTCCTGTGTGATTGCACTACATAGCTCTGATGCCCCTGATCTAA GTGATGAAAATGAATTGGAAAAATGTCTGGATTGAATATGCAGAAAATCTAAGTGATGGAAGTG TGGAACAGTGCAGAACCACAGGCAAACAAGCGTAAGTTTGGATATACGCTTGCCACTGATGCAT GCTATACACTCTTTATATTATTTATATATACAATCAACACCATTTCAGATATTCGTATAACGTG CCTCAGCCACATGGAAACTAAACTGTGTGAAGGTGACTAATTGTGTTATTTCCATAAAAGGGTA CTTTAAAAAAATGCAAAAGGGGCTTCGCAGAGCCCAAAAAAACAGATAAACAGTCCAACTCAGT ATATAATTTGAGTCTTCTAACTTAATTTGCATACATTAAATTAGTCCAAGTCAATTGTAGTTAC CTTATCTTGTGGATTGTTTGGCACACGGTGAAACGCGTGCAGCGAATGAGGCAAATCCAAAGGA GCAATTGGATCACAAGTAGAACTTTTTGGGCTTTCCATTTTCATGACAATGTGCCAACTGAAAT ATTTCAATAAGTACCAATCAACATCCGTATGGAGATTACAGATAGAAGGTGTGAACAACAATGG AGATTGTACCTTGCAAAACAAACCTACCTATCAATTTTCATCTCTTTCGCTTGTCTTACTGACT GTAGAAACGATAGAACTGACTTTTCATCTGTTCCAGGATTTCTCTTCCC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.110495436

Conservation Information
Conserved circRNAs	NA
PMCS	0.110495436

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							33189855-33187444(+)
33189982-33187446(-)
33187537-33189997(-)
						
						Potential amino acid sequence
						
							MTMCQLSIFISFACLTDCRNDRTDFSSVPGFLFP*(+)
MKIDSWHIVMKMESPKSSTCDPIAPLDLPHSLHAFHRVPNNPQDKEYSCTFRGGFWNYFSMGMD
AQVSYAFHSERKLHPEKFKNQLSNQKTYLKLACTQGWFCASLCHPMSRNIAHLSKVKIMKKSGK
WETLEIPQSIRSIVCLNLPSFSGGLNPWGTPSERKQRKRDLVMPPLVDDGLLEIVGFKDAWHGL
VLLSPKGHGTRLAQGKRNPGTDEKSVLSFLQSVRQAKEMKIDSWHIVMKMESPKSSTCDPIAPL
DLPHSLHAFHRVPNNPQDKEYSCTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLSNQK
TYLKLACTQGWFCASLCHPMSRNIAHLSKVKIMKKSGKWETLEIPQSIRSIVCLNLPSFSGGLN
PWGTPSERKQRKRDLVMPPLVDDGLLEIVGFKDAWHGLVLLSPKGHGTRLAQGKRNPGTDEKSV
LSFLQSVRQAKEMKIDSWHIVMKMESPKSSTCDPIAPLDLPHSLHAFHRVPNNPQDKEYSCTFR
GGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLSNQKTYLKLACTQGWFCASLCHPMSRNIAH
LSKVKIMKKSGKWETLEIPQSIRSIVCLNLPSFSGGLNPWGTPSERKQRKRDLVMPPLVDDGLL
EIVGFKDAWHGLVLLSPKGHGTRLAQGKRNPGTDEKSVLSFLQSVRQAKEMKIDSWHIVMKMES
PKSSTCDPIAPLDLPHSLHAFHRVPNNPQDKEYSCTFRGGFWNYFSMGMDAQVSYAFHSERKLH
PEKFKNQLSNQKTYLKLACTQGWFCASLCHPMSRNIAHLSKVKIMKKSGKWETLEIPQSIRSIV
CLNLPSFSGGLNPWGTPSERKQRKRDLVMPPLVDDGLLEIVGFKDAWHGLVLLSPKGHGTRLAQ
(-)
MMVFWRLWVLKMLGMDLCCYLQKAMALVLLRGREILEQMKSQFYRFYSQ*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	33189855-33187444(+) 33189982-33187446(-) 33187537-33189997(-)
Potential amino acid sequence	MTMCQLSIFISFACLTDCRNDRTDFSSVPGFLFP(+) MKIDSWHIVMKMESPKSSTCDPIAPLDLPHSLHAFHRVPNNPQDKEYSCTFRGGFWNYFSMGMD AQVSYAFHSERKLHPEKFKNQLSNQKTYLKLACTQGWFCASLCHPMSRNIAHLSKVKIMKKSGK WETLEIPQSIRSIVCLNLPSFSGGLNPWGTPSERKQRKRDLVMPPLVDDGLLEIVGFKDAWHGL VLLSPKGHGTRLAQGKRNPGTDEKSVLSFLQSVRQAKEMKIDSWHIVMKMESPKSSTCDPIAPL DLPHSLHAFHRVPNNPQDKEYSCTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLSNQK TYLKLACTQGWFCASLCHPMSRNIAHLSKVKIMKKSGKWETLEIPQSIRSIVCLNLPSFSGGLN PWGTPSERKQRKRDLVMPPLVDDGLLEIVGFKDAWHGLVLLSPKGHGTRLAQGKRNPGTDEKSV LSFLQSVRQAKEMKIDSWHIVMKMESPKSSTCDPIAPLDLPHSLHAFHRVPNNPQDKEYSCTFR GGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLSNQKTYLKLACTQGWFCASLCHPMSRNIAH LSKVKIMKKSGKWETLEIPQSIRSIVCLNLPSFSGGLNPWGTPSERKQRKRDLVMPPLVDDGLL EIVGFKDAWHGLVLLSPKGHGTRLAQGKRNPGTDEKSVLSFLQSVRQAKEMKIDSWHIVMKMES PKSSTCDPIAPLDLPHSLHAFHRVPNNPQDKEYSCTFRGGFWNYFSMGMDAQVSYAFHSERKLH PEKFKNQLSNQKTYLKLACTQGWFCASLCHPMSRNIAHLSKVKIMKKSGKWETLEIPQSIRSIV CLNLPSFSGGLNPWGTPSERKQRKRDLVMPPLVDDGLLEIVGFKDAWHGLVLLSPKGHGTRLAQ (-) MMVFWRLWVLKMLGMDLCCYLQKAMALVLLRGREILEQMKSQFYRFYSQ(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os01g0783200_circ_g.1

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