Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G08620_circ_g.1 |
ID in PlantcircBase | ath_circ_001429 |
Alias | Chr1:2736846|2737245 |
Organism | Arabidpsis thaliana |
Position | chr1: 2736846-2737245 JBrowse» |
Reference genome | TAIR10.38 |
Type | u-circRNA |
Identification method | CIRCexplorer; CIRI |
Parent gene | AT1G08620 |
Parent gene annotation |
Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein |
Parent gene strand | + |
Alternative splicing | AT1G08620_circ_g.2 |
Support reads | 3 |
Tissues | seedling |
Exon boundary | Yes-No |
Splicing signals | GA-AA |
Number of exons covered | AT1G08620.4:1 AT1G08620.1:1 AT1G08620.2:1 AT1G08620.3:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.261662614 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to methyl jasmonate |
Other Information | |
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References | Zhang et al., 2020 |