Plant Circular RNA Database

Detail information of AT4G04750_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT4G04750_circ_g.1
					
						ID in PlantcircBase
						ath_circ_029700
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr4: 2418570-2421608  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						PcircRNA_finder
					
						Parent gene
						
							AT4G04750						
					
						Parent gene annotation
						
							Major facilitator superfamily protein
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT4G04750_circ_g.2 4_circ_ag.3 4_circ_ag.4 4_circ_ag.5 						
					
						Support reads
						1
					
						Tissues
						whole_plant
					
						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							AG-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT4G04750.1:12
AT4G04750.3:12
AT4G04750.2:12

General Information
CircRNA Name	AT4G04750_circ_g.1
ID in PlantcircBase	ath_circ_029700
Alias	NA
Organism	Arabidpsis thaliana
Position	chr4: 2418570-2421608 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	PcircRNA_finder
Parent gene	AT4G04750
Parent gene annotation	Major facilitator superfamily protein
Parent gene strand	+
Alternative splicing	AT4G04750_circ_g.2 4_circ_ag.3 4_circ_ag.4 4_circ_ag.5
Support reads	1
Tissues	whole_plant
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	AG-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT4G04750.1:12 AT4G04750.3:12 AT4G04750.2:12

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTTTGAAGAAGATTAAAGAGAAGATTTTTTGAGTGATTGTAGTTTTCTCAAGCTGGAATGTTCT
TGGGTTGTCTAGCAACAGCCATTTCATTCTTCTTGCttttcattttttggatcgatattgacag
tggggctaatccttggagcattaatttgtgggaaattggcagatttggttggtcgtgtctatgt
aagttttt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							TTTTCATTTTTTGGATCGATATTGACAGTGGGGCTAATCCTTGGAGCATTAATTTGTGGGAAAT
TGGCAGATTTGGTTGGTCGTGTCTATGTAAGTTTTTCCACTTTAAGAAAATTACTAGCACTAAA
TTTACGAATTTTAACTATACAATTATGGATGTAACCACCATTTTAAATTAATCTTGAACCAGAC
GATATGGATTACAAACATTCTTGTTTTAATCGGCTGGTTAGCTATTGCATTTGCCAAGGTTTGC
GAGTTTCTTATTTTATGTTATGTTTCCATAATGAAATGTTGATTAACTCGAAAAGTGAATATAA
TTCTTTAAATATCTTCTTATTCTTTTTTTCTGTATTTTTTTGTTTTGTTACAAAGGATGTTCGG
CTACTCGATCTTGGAAGGTTATTGCAAGGGATCTCGGTCGGAATTAGCTCATATTTGGTATGAA
AAATGATTATAAAATATAAATAGAGGTCTTTAATCAAGAGAAATGCCTTGAATGTAGGTTGAGG
ATTAATATTTCTAAAATTTAGTTTAATAAGGTTATACACATCATTTAAGACCTTATCCTAAACT
TAAAGGAACCATATATACTTCAACTAAGTTGTGTTATTTTTGGAAATCTAAGATTTTTATGGTA
ATTTGGAACACAAAGCACAAAATGTGTAATAATTTAATCCTTTCAGTCAAAGAAAAAAAAATTC
TTTTAATAAATTTTTCGTTTATATTCTCTGATATTTTGATTCAATGGTGCGTATACATTCAACA
TATTTGATAGATTTGGGCTTTAACTCAGCTTCTAACTCGAAACCAATTGGCAATGAATAGAGTG
ACCCTAACCTTTTATATATCACTAGATATTTCCTCTAACTTCGGATGTGAGACTTTCTCTCATT
AACAGTATTAATTTACTTGTAAATGTACTTTTTTAGTTTCAGATCGATGTGATAATTTGGTAAA
TTCAATGTGTTCTATAAACTTTGAGATTTGAATTTATTGAAAATGAAATTTCATATTAGATTCT
GGTATTGATTAATCACAGGGACCTATTTACATTAGCGAGTTAGCACCAAGAAATTTGCGAGGAG
CTGCTTCTTCGTTGATGCAGGTAAACTAAGAGAAGCAGAATCCTTGAAAACTATTACAAAAATA
TAACATAATTACATAACTATAAGTTTTAAATGTTCTACAGTTATTTGTCGGTGTGGGTCTATCG
GCCTTTTATGCTCTCGGAACAGCCGTTGCTTGGCGCAGTTTAGCCATTTTAGGCATGTAAAGGA
GATTGATTCATATCAATGCATGCACCAATGGATCAAAAATTCTTGTTTCATTCGAAGAGAAATA
TATATATTGTACTAATGATTTTGTGTTTTGTCTTTGGACAGGATCTATACCTTCTCTAGTGGTT
CTGCCTCTTCTTTTCTTCATCCCCGAATCTCCTAGATGGCTAGTAAGCACTCGTTTATATTATC
CATTTTCATCAATTTGTTTGGTCAAAATACATTTGCATTTACGCTTATGTTTACGTACGTGTTA
AGTTTCATGGGATTTCATTGTCTCTTATACACTACAATAGGTCCCGTTAAACTTCAATTAATGT
AAGGATCGAAACATTGCATTTTAAATTCTTGGTCTTACCTTCTAAGAAAACATGTATTACCTTC
TTGGTCTTCTTTTCTAAATGAGGGATCATCTCAATGTTCTTTTTTTTTTAATATCTGGATTCTA
GAAGTTCAAACACAAAGACCCTACATATCCTAGAGGCAGAATCCACACCAAGTTAAATTCATCT
CCTTTGGAGAAGAGATCCCTCCCAACGTACCTCGAACCTAACACCTCTACTTGGAAAATTTACC
ACTGGGCCAACAGCTCGTTGGTCATCTAAGTGTTTTACCTTATAAGAAAACAAAATTTTAGTGT
TTATACCAATTGTCTTTTGGAAAATATAACAATCAAAGCTGATAAGACTAGAACCTTACTGAAC
TATGATGGTCATCTAAACTCTTGGTTCCAAATGTACACGATTAAAAACAACCAGATCCTGTTTG
TTTAGCCTAAGTCTCTTCCGTTCATCTCCAACCCATAAAATACGATTAAAGTTACCAAAGGCTA
GCTTATCAATGATTTGATCATTGATGAATTTTGTTTGTAGGCTAAAGTTGGGAGGGAAAAGGAG
GTTGAAGGGGTTTTATTAAGCTTGCGAGGAGCAAAATCTGATGTATCAGATGAAGCAGCAACGA
TATTAGTAAGGATATATAAATATACATGCATTATAATAGTCATATGATCAACATATATATTTAC
ATTGATTTCCCAAATTTTTGATGATCATCAGGAATATACAAAACATGTCGAACAACAAGACATC
GATAGCCGCGGTTTCTTCAAGTTGTTCCAGCGAAAATACGCGTTGCCACTAACTGTAAGTAACT
TTTCAAAAAGAGGTAACAACATAAAATTGAAAACATTATTATCTTTGCATTTTCTTAATTATTC
AACCCTTTTGTTTTACACAGATTGGAGTTGTCCTTATATCTATGCCTCAGCTTGGAGGTCTTAA
TGGTTATACTTTTTACACCGATACCATTTTCACCTCTACCGGTAAATAATAACCCCATTCTTCT
TCTTTGATATTTCTTCATCAAACGGTCAATCATTATCTGATTGAATGATCAGGTGTATCAAGTG
ACATTGGATTCATATTGACATCTATTGTTCAGGTTTTACTAATATAAGATCATAAAGCATGACT
ATTATTCATAAGTTTATTTTTCCTATAACAATCTATCATCATTCTTGTAGATGACTGGAGGCGT
TTTAGGTGTTTTGCTTGTGGATATATCCGGAAGACGTTCTCTCCTACTGGTAAACGAAATTTAA
AACTCGAAAAACCGAAAGTGTATAAATAATCGAATCGATAAGTTATTTGAAATTATTTGTTTTG
AAGAAGATTAAAGAGAAGATTTTTTGAGTGATTGTAGTTTTCTCAAGCTGGAATGTTCTTGGGT
TGTCTAGCAACAGCCATTTCATTCTTCTTGC
						
					

			
		

Sequences
Splice junction sequence	TTTTGAAGAAGATTAAAGAGAAGATTTTTTGAGTGATTGTAGTTTTCTCAAGCTGGAATGTTCT TGGGTTGTCTAGCAACAGCCATTTCATTCTTCTTGCttttcattttttggatcgatattgacag tggggctaatccttggagcattaatttgtgggaaattggcagatttggttggtcgtgtctatgt aagttttt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TTTTCATTTTTTGGATCGATATTGACAGTGGGGCTAATCCTTGGAGCATTAATTTGTGGGAAAT TGGCAGATTTGGTTGGTCGTGTCTATGTAAGTTTTTCCACTTTAAGAAAATTACTAGCACTAAA TTTACGAATTTTAACTATACAATTATGGATGTAACCACCATTTTAAATTAATCTTGAACCAGAC GATATGGATTACAAACATTCTTGTTTTAATCGGCTGGTTAGCTATTGCATTTGCCAAGGTTTGC GAGTTTCTTATTTTATGTTATGTTTCCATAATGAAATGTTGATTAACTCGAAAAGTGAATATAA TTCTTTAAATATCTTCTTATTCTTTTTTTCTGTATTTTTTTGTTTTGTTACAAAGGATGTTCGG CTACTCGATCTTGGAAGGTTATTGCAAGGGATCTCGGTCGGAATTAGCTCATATTTGGTATGAA AAATGATTATAAAATATAAATAGAGGTCTTTAATCAAGAGAAATGCCTTGAATGTAGGTTGAGG ATTAATATTTCTAAAATTTAGTTTAATAAGGTTATACACATCATTTAAGACCTTATCCTAAACT TAAAGGAACCATATATACTTCAACTAAGTTGTGTTATTTTTGGAAATCTAAGATTTTTATGGTA ATTTGGAACACAAAGCACAAAATGTGTAATAATTTAATCCTTTCAGTCAAAGAAAAAAAAATTC TTTTAATAAATTTTTCGTTTATATTCTCTGATATTTTGATTCAATGGTGCGTATACATTCAACA TATTTGATAGATTTGGGCTTTAACTCAGCTTCTAACTCGAAACCAATTGGCAATGAATAGAGTG ACCCTAACCTTTTATATATCACTAGATATTTCCTCTAACTTCGGATGTGAGACTTTCTCTCATT AACAGTATTAATTTACTTGTAAATGTACTTTTTTAGTTTCAGATCGATGTGATAATTTGGTAAA TTCAATGTGTTCTATAAACTTTGAGATTTGAATTTATTGAAAATGAAATTTCATATTAGATTCT GGTATTGATTAATCACAGGGACCTATTTACATTAGCGAGTTAGCACCAAGAAATTTGCGAGGAG CTGCTTCTTCGTTGATGCAGGTAAACTAAGAGAAGCAGAATCCTTGAAAACTATTACAAAAATA TAACATAATTACATAACTATAAGTTTTAAATGTTCTACAGTTATTTGTCGGTGTGGGTCTATCG GCCTTTTATGCTCTCGGAACAGCCGTTGCTTGGCGCAGTTTAGCCATTTTAGGCATGTAAAGGA GATTGATTCATATCAATGCATGCACCAATGGATCAAAAATTCTTGTTTCATTCGAAGAGAAATA TATATATTGTACTAATGATTTTGTGTTTTGTCTTTGGACAGGATCTATACCTTCTCTAGTGGTT CTGCCTCTTCTTTTCTTCATCCCCGAATCTCCTAGATGGCTAGTAAGCACTCGTTTATATTATC CATTTTCATCAATTTGTTTGGTCAAAATACATTTGCATTTACGCTTATGTTTACGTACGTGTTA AGTTTCATGGGATTTCATTGTCTCTTATACACTACAATAGGTCCCGTTAAACTTCAATTAATGT AAGGATCGAAACATTGCATTTTAAATTCTTGGTCTTACCTTCTAAGAAAACATGTATTACCTTC TTGGTCTTCTTTTCTAAATGAGGGATCATCTCAATGTTCTTTTTTTTTTAATATCTGGATTCTA GAAGTTCAAACACAAAGACCCTACATATCCTAGAGGCAGAATCCACACCAAGTTAAATTCATCT CCTTTGGAGAAGAGATCCCTCCCAACGTACCTCGAACCTAACACCTCTACTTGGAAAATTTACC ACTGGGCCAACAGCTCGTTGGTCATCTAAGTGTTTTACCTTATAAGAAAACAAAATTTTAGTGT TTATACCAATTGTCTTTTGGAAAATATAACAATCAAAGCTGATAAGACTAGAACCTTACTGAAC TATGATGGTCATCTAAACTCTTGGTTCCAAATGTACACGATTAAAAACAACCAGATCCTGTTTG TTTAGCCTAAGTCTCTTCCGTTCATCTCCAACCCATAAAATACGATTAAAGTTACCAAAGGCTA GCTTATCAATGATTTGATCATTGATGAATTTTGTTTGTAGGCTAAAGTTGGGAGGGAAAAGGAG GTTGAAGGGGTTTTATTAAGCTTGCGAGGAGCAAAATCTGATGTATCAGATGAAGCAGCAACGA TATTAGTAAGGATATATAAATATACATGCATTATAATAGTCATATGATCAACATATATATTTAC ATTGATTTCCCAAATTTTTGATGATCATCAGGAATATACAAAACATGTCGAACAACAAGACATC GATAGCCGCGGTTTCTTCAAGTTGTTCCAGCGAAAATACGCGTTGCCACTAACTGTAAGTAACT TTTCAAAAAGAGGTAACAACATAAAATTGAAAACATTATTATCTTTGCATTTTCTTAATTATTC AACCCTTTTGTTTTACACAGATTGGAGTTGTCCTTATATCTATGCCTCAGCTTGGAGGTCTTAA TGGTTATACTTTTTACACCGATACCATTTTCACCTCTACCGGTAAATAATAACCCCATTCTTCT TCTTTGATATTTCTTCATCAAACGGTCAATCATTATCTGATTGAATGATCAGGTGTATCAAGTG ACATTGGATTCATATTGACATCTATTGTTCAGGTTTTACTAATATAAGATCATAAAGCATGACT ATTATTCATAAGTTTATTTTTCCTATAACAATCTATCATCATTCTTGTAGATGACTGGAGGCGT TTTAGGTGTTTTGCTTGTGGATATATCCGGAAGACGTTCTCTCCTACTGGTAAACGAAATTTAA AACTCGAAAAACCGAAAGTGTATAAATAATCGAATCGATAAGTTATTTGAAATTATTTGTTTTG AAGAAGATTAAAGAGAAGATTTTTTGAGTGATTGTAGTTTTCTCAAGCTGGAATGTTCTTGGGT TGTCTAGCAACAGCCATTTCATTCTTCTTGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.099951292

Conservation Information
Conserved circRNAs	NA
PMCS	0.099951292

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of AT4G04750_circ_g.1

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