logo





circRNA ID
AT1G01520_circ_g.4
Alias
ath_circ_000075, Ath_circ_FC0123, Ath_circ_FC0124, Ath_circ_FC0125
Organism
Arabidpsis thaliana
Position
chr1: 191341-192026  JBrowse»
Reference genome
TAIR10.38
Type  
ue-circRNA
Identification method
KNIFE
Parent gene
Parent gene annotation
ASG4
Parent gene strand
+
Splice junction sequence  
GATTTGAAAACTAACGTTTACACGGTTTTTTGTTCAACAGGTTCTCTTACTGATGAAAAATTTA
TCTGTAAACCTGACGAGTCCCGAGTTTGATGAACAAttactctttcttcttcaaacgcattatt
tcaacatgactacttatacaacactaattcacatccggtgattagcaccacccgtaagcatgga
ttagtgca
Support reads
1
Tissues
leaf
Exon boundary  
Yes-Yes
Splicing signals  
GT-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
TTACTCTTTCTTCTTCAAACGCATTATTTCAACATGACTACTTATACAACACTAATTCACATCC
GGTGATTAGCACCACCCGTAAGCATGGATTAGTGCATTGCGATGTTAGTATACCAAGTTCTGTT
ATCAAAGGTAAAATATGTGCTTAAGTTTGCTGTGTGGACTAATGTAATAATCTGAAGATATTGC
TTGTTTGAGTTGTTAATAATGTGGGGTAATGAATTTGTGATTGTAGAGGAATTTGGTGTCTCAG
AGAACTGTTGCAGCACTAGTAGTAGTAGAGATAAGCAGAGGACTAGAATCGTTACAGAGACAAA
TGACCAAGAAAGTTGTGGAAAGCCACATAGAGGTAACAATTTTGCTTGAGATTCCTGACTTTGT
GATATTCATATACTGATTATGAGTTTGTTTGTTTGATGTTGGTTTTTCAATTCAGTGGCGCCAA
ATTTCGCTGAAGTTTACAATTTTATAGGAAGTGTGTTTGATCCTAAAACAACAGGTCATGTCAA
GAGATTAAAGGAAATGGATCCAATAAATCTTGAGACGGTATGAAAACCAATAACTCTGCACATG
AACATGTCTTGATTTGAAAACTAACGTTTACACGGTTTTTTGTTCAACAGGTTCTCTTACTGAT
GAAAAATTTATCTGTAAACCTGACGAGTCCCGAGTTTGATGAACAA
Number of exons covered
AT1G01520.5:4
AT1G01520.4:3
AT1G01520.2:3
AT1G01520.3:4
AT1G01520.1:4
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Chu et al., 2017;Chen et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

Supported by   nsfc    zju