Detail information of Os04g0337800_circ_ag.1


General Information
CircRNA Name Os04g0337800_circ_ag.1
ID in PlantcircBase osa_circ_023439
Alias Os_ciR1425
Organism Oryza sativa
Position chr4: 15908028-15917559  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0337500_circ_ag.1 Os04g0337500_circ_ag.2 Os04g0337500_circ_ag.3 Os04g0337500_circ_ag.4 Os04g0337500_circ_ag.5 Os04g0338000_circ_ag.1 Os04g0338000_circ_ag.2
Support reads 15
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTATCAGAAGGGCTCATGCTGTACACCCTATCACTGCTGTTCAGCTTGAGTGGTCATTATGGTC
TAGAGACGTGGAAGAAGATATAATTCCAACTTGCAGggaacttggaattggaatagtagcttac
agcccacttggtagagggttagttcttttctggtggagctaaactagtggattctctaccagac
catgattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osi_circ_014244
PMCS 0.964594743
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015