Detail information of Os04g0398800_circ_g.10


General Information
CircRNA Name Os04g0398800_circ_g.10
ID in PlantcircBase osa_circ_023686
Alias NA
Organism Oryza sativa
Position chr4: 19705371-19705914  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0398800
Parent gene annotation Similar to H0209H04.5 protein. (Os04t0398800-01)
Parent gene strand -
Alternative splicing Os04g0398800_circ_g.6 Os04g0398800_circ_g.7 Os04g0398800_circ_g.8 Os04g0398800_circ_g.9
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTCATAAAAACATAACTAATAATAACATAGAGAAGAATCTGGAACACCATGCTAGCATTAACA
GCACTTCCTATTAAATGACTAGATCAGGAGAGAAACtaagatctacatattccataagtatgag
ttcaacacatcaacatatatgataaattgatacggagagtatttatacaacgaaggaaaaggaa
tttctcta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TAAGATCTACATATTCCATAAGTATGAGTTCAACACATCAACATATATGATAAATTGATACGGA
GAGTATTTATACAACGAAGGAAAAGGAATTTCTCTAATTATAGCAACTCGTGCCGAAACAAACT
CACCAAAAAAGGGGGTTATCAATTCATGTAACTCACAAGTCACAACTTTGTTACTAAATAATAA
TGTAGTGAAATATCTAAACCATGCAATAAACTCATGCAACAATTGAAATGAGGATACTTTAATA
CATCCAGAACACTATCTTTCCCTTAAATGGAACAACAAAGAAATGACTTCCAGTATGTTTACTG
AATGCATTCAACATGGCACAATATACAACAATATGTCATACATTGTGATCTTAGAAGCAATAGT
TTGTTTACCAATTCTTTCAAAACATAGTTTGTTTACCAAAGTTGAGAGCTTGTTATTACCAGTC
ATAAAAACATAACTAATAATAACATAGAGAAGAATCTGGAACACCATGCTAGCATTAACAGCAC
TTCCTATTAAATGACTAGATCAGGAGAGAAAC
Conservation Information
Conserved circRNAs osi_circ_014317*
PMCS 0.220060968
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017