Detail information of AT2G30860_circ_g.2


General Information
CircRNA Name AT2G30860_circ_g.2
ID in PlantcircBase ath_circ_015731
Alias 2:13139144-13139636
Organism Arabidpsis thaliana
Position chr2: 13139144-13139636  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G30860
Parent gene annotation GSTF9
Parent gene strand +
Alternative splicing AT2G30860_circ_g.1 AT2G30860_circ_g.3 2_circ_ag.4 AT2G30860_circ_g.5 AT2G30860_circ_g.6 AT2G30860_circ_g.7 AT2G30860_circ_g.8 AT2G30860_circ_g.9 AT2G30860_circ_g.10 AT2G30870_circ_g.1
Support reads 2
Tissues flower
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G30860.1:3
AT2G30860.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCATGTTTGTTTTGGTTGTATGTATCTATAGTGATGCTAAGAGATGGTTTTTGATCTTTTGAC
AGAGTCCCGTGCGGTGATGAGGTACGTAGCTGAGAAgtgtacggacctcactttgcttcaccaa
agagagctttggtcacactgatcgagaagggcgttgccttcgagaccatccccgtcgatctcat
gaaaggag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGTACGGACCTCACTTTGCTTCACCAAAGAGAGCTTTGGTCACACTGATCGAGAAGGGCGTTG
CCTTCGAGACCATCCCCGTCGATCTCATGAAAGGAGAACACAAGCAGCCTGCTTATCTCGCTCT
ACAGGTTCCTTCCTTCTTCTTCTTCTTCCTTCATCTTCTCTGATTTCTTCCTTTTTTCTCCGAT
TCTGATGGTTTCTTGATTCTTCTTCCTATGCAGCCTTTTGGTACTGTTCCTGCTGTTGTTGACG
GTGACTACAAAATCTTCGGTAAGATCTTTAAGAAAATTTCAGTATCTGTTTTGATTGTTTCTAT
AATAAGGTCAATTTCGTCACAGAACAACCAAGTTCTGTTTTAGGTCAAGTTCTATAGTTATGAT
TTGTGTTGGCTCATGTTTGTTTTGGTTGTATGTATCTATAGTGATGCTAAGAGATGGTTTTTGA
TCTTTTGACAGAGTCCCGTGCGGTGATGAGGTACGTAGCTGAGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.180790621
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020