Detail information of AT2G30860_circ_g.7


General Information
CircRNA Name AT2G30860_circ_g.7
ID in PlantcircBase ath_circ_015736
Alias 2:13139699-13139899
Organism Arabidpsis thaliana
Position chr2: 13139699-13139899  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G30860
Parent gene annotation GSTF9
Parent gene strand +
Alternative splicing AT2G30860_circ_g.1 AT2G30860_circ_g.2 AT2G30860_circ_g.3 2_circ_ag.4 AT2G30860_circ_g.5 AT2G30860_circ_g.6 AT2G30860_circ_g.8 AT2G30860_circ_g.9 AT2G30860_circ_g.10 AT2G30870_circ_g.1
Support reads 1/3/1
Tissues root;leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT2G30860.1:1
AT2G30860.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGATCAAGGAGAGTGAAGAGAAGCTTGCGGGTGTTCTTGATGTCTACGAGGCACATCTCTCAA
AGAGCAAGTACTTGGCCGGTGACTTCGTGAGCTTGGaatggcttgatgtggaagcgaccactta
ccacccaccgctattgaacttaacgcttcacataatgttcgcatcagtcatgggattcccatct
gatgagaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 201
Transcript exons: 13139699-13139899
AATGGCTTGATGTGGAAGCGACCACTTACCACCCACCGCTATTGAACTTAACGCTTCACATAAT
GTTCGCATCAGTCATGGGATTCCCATCTGATGAGAAGCTGATCAAGGAGAGTGAAGAGAAGCTT
GCGGGTGTTCTTGATGTCTACGAGGCACATCTCTCAAAGAGCAAGTACTTGGCCGGTGACTTCG
TGAGCTTGG

Genomic sequence AATGGCTTGATGTGGAAGCGACCACTTACCACCCACCGCTATTGAACTTAACGCTTCACATAAT
GTTCGCATCAGTCATGGGATTCCCATCTGATGAGAAGCTGATCAAGGAGAGTGAAGAGAAGCTT
GCGGGTGTTCTTGATGTCTACGAGGCACATCTCTCAAAGAGCAAGTACTTGGCCGGTGACTTCG
TGAGCTTGG
Conservation Information
Conserved circRNAs NA
PMCS 0.303264701
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020