Detail information of BGIOSGA014864_circ_igg.1


General Information
CircRNA Name BGIOSGA014864_circ_igg.1
ID in PlantcircBase osi_circ_014468
Alias Chr04:24569923_24570985(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 22485850-22486912  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA014864_circ_igg.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATTACTTCAGCCACTTTATCAGTTCTAACAGCACCATATTGCTTCAGGTATTCGACAAGAGC
TTTGTTCTTGTCCAGTGATCCTTGAGTCCAGAATTGcatgtgttttcatgacctcctagagccg
tcgaccttaggaatcctgcagctgagcggagcggctggtcagagggacgtagcggacggacgcg
tcgttctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGTGTTTTCATGACCTCCTAGAGCCGTCGACCTTAGGAATCCTGCAGCTGAGCGGAGCGGCT
GGTCAGAGGGACGTAGCGGACGGACGCGTCGTTCTGGACGGTCACCGAGCCGTCGGCGTTCTTG
TCGACCACCTGCAGCTCCTGGAAGTAGCTGCCGACGGGTATGACCATCCGGCCGCCGGTCTTCA
GCTGATCGACCAGAGGCTGAGGGATCTCCGGTGCCGCGGCGCCCACATGAATGGCGTCGTATGG
TGCATCGTCAGGCCAACCAAGCCTGCCATCTGCAGCGTTGAGAACGGCAAGAAATATTATGCGC
ATAGTGATTTTGCATTTTAGATTTCGCCAAGATGGAAGCAAAGCATGCGTTCAGTAATACACTA
ATTCTAGTGCCAGTATCAGACCAGTTAGCAGCTTAGCATACCTGCAACATGGAAAGAAAGAGAT
CCATCCTTCAGTAATTGTGCTGCGGCACTTCTTTGGACATTCTCAGTCGAAGCAGCGACAAGCT
CAGGAATATGTTCTATCCCCACTGCACGGCCTTCTGGTCCAACCATCATTGCAAAACAAGCTGT
CAAGTAACCGCTGCCTACAAGAGTTACACATGCAGATGAAATGTGTCAATAGTTAGAAAATTGT
TTGTATCTCAACTATCTAATACTAATGGATAACAGCAAGTCGTTCACACAACTGCATGGTCTAG
AAAACTCAACAGGGCACTCTAAAAACAACCGCATTTGCTATAGTACAGGACTACAGGAGTATGG
TGTTTCAGTAATGAACCTGAATACCTGATCCAACATCTAGAGCATGCATTCCTGGCTGCAAGTG
ATCCTTCAGTAGCTCCAAGCAGGTCGCATGCATGTGAGGAGCAGATATCGTCGCGTTATAACCA
ATAGGCATAGGGCTGTCAGTGTAAGGAGTAAGGCCCTCTGCTACGAACAATGCTCTGTCAATGC
TTTCCATTACTTCAGCCACTTTATCAGTTCTAACAGCACCATATTGCTTCAGGTATTCGACAAG
AGCTTTGTTCTTGTCCAGTGATCCTTGAGTCCAGAATTG
Conservation Information
Conserved circRNAs osa_circ_024237
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021