Detail information of BGIOSGA014864_circ_igg.2


General Information
CircRNA Name BGIOSGA014864_circ_igg.2
ID in PlantcircBase osi_circ_005562
Alias 4:22485851|22486912
Organism Oryza sativa ssp. indica
Position chr4: 22485851-22486912  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA014864_circ_igg.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATTACTTCAGCCACTTTATCAGTTCTAACAGCACCATATTGCTTCAGGTATTCGACAAGAGC
TTTGTTCTTGTCCAGTGATCCTTGAGTCCAGAATTGatgtgttttcatgacctcctagagccgt
cgaccttaggaatcctgcagctgagcggagcggctggtcagagggacgtagcggacggacgcgt
cgttctgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGTGTTTTCATGACCTCCTAGAGCCGTCGACCTTAGGAATCCTGCAGCTGAGCGGAGCGGCTG
GTCAGAGGGACGTAGCGGACGGACGCGTCGTTCTGGACGGTCACCGAGCCGTCGGCGTTCTTGT
CGACCACCTGCAGCTCCTGGAAGTAGCTGCCGACGGGTATGACCATCCGGCCGCCGGTCTTCAG
CTGATCGACCAGAGGCTGAGGGATCTCCGGTGCCGCGGCGCCCACATGAATGGCGTCGTATGGT
GCATCGTCAGGCCAACCAAGCCTGCCATCTGCAGCGTTGAGAACGGCAAGAAATATTATGCGCA
TAGTGATTTTGCATTTTAGATTTCGCCAAGATGGAAGCAAAGCATGCGTTCAGTAATACACTAA
TTCTAGTGCCAGTATCAGACCAGTTAGCAGCTTAGCATACCTGCAACATGGAAAGAAAGAGATC
CATCCTTCAGTAATTGTGCTGCGGCACTTCTTTGGACATTCTCAGTCGAAGCAGCGACAAGCTC
AGGAATATGTTCTATCCCCACTGCACGGCCTTCTGGTCCAACCATCATTGCAAAACAAGCTGTC
AAGTAACCGCTGCCTACAAGAGTTACACATGCAGATGAAATGTGTCAATAGTTAGAAAATTGTT
TGTATCTCAACTATCTAATACTAATGGATAACAGCAAGTCGTTCACACAACTGCATGGTCTAGA
AAACTCAACAGGGCACTCTAAAAACAACCGCATTTGCTATAGTACAGGACTACAGGAGTATGGT
GTTTCAGTAATGAACCTGAATACCTGATCCAACATCTAGAGCATGCATTCCTGGCTGCAAGTGA
TCCTTCAGTAGCTCCAAGCAGGTCGCATGCATGTGAGGAGCAGATATCGTCGCGTTATAACCAA
TAGGCATAGGGCTGTCAGTGTAAGGAGTAAGGCCCTCTGCTACGAACAATGCTCTGTCAATGCT
TTCCATTACTTCAGCCACTTTATCAGTTCTAACAGCACCATATTGCTTCAGGTATTCGACAAGA
GCTTTGTTCTTGTCCAGTGATCCTTGAGTCCAGAATTG
Conservation Information
Conserved circRNAs osa_circ_024237*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021