Detail information of EPlOSAG00000039349_circ_ig.2


General Information
CircRNA Name EPlOSAG00000039349_circ_ig.2
ID in PlantcircBase osa_circ_001470
Alias NA
Organism Oryza sativa
Position chr1: 11033473-11034144  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000013235_circ_ig.2 EPlOSAG00000039349_circ_ig.1 EPlOSAG00000039349_circ_ig.3 EPlOSAG00000039349_circ_ig.4 EPlOSAG00000039349_circ_ig.5 EPlOSAG00000039349_circ_ig.6 EPlOSAG00000039349_circ_ig.7
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAGTCATATGACTGTGCTCAACAGAAACAAGCAGTGAAGGGGGAGAGACATCAAAAACAGTAT
TTTCCCCTTTGTAGTACGGCAACAGCTCATAGCTACctgatcaagtctgtaatacccaagattg
tctgttacagctctcaactgaccatccacgataacattagcaccttccacaccagcaccatacc
catcaaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGATCAAGTCTGTAATACCCAAGATTGTCTGTTACAGCTCTCAACTGACCATCCACGATAACA
TTAGCACCTTCCACACCAGCACCATACCCATCAACAACACGCCCTCCAACAGAAAACCCAGTAA
CCTAGTAAGACATGAATGAGGAATCACTAGTCAGCTAGTGGAGAGAAGGTCCACTGTAAGGAGT
GAAAAAGACAAAATTGAATGTGTGACACTGATGAACAGATAAAAAAAAAGGAACATATCAAAAC
TAAGATGCTTAAGCAGCTGAAAGTTTGGAAATGTCAAGTCTACATCGAGCTGTCATGTAATCCA
CCATCTGCACCCAGTAAACCTTGAAATATATTTTTTTTCATTAAATGGGCCATACATCTCCATT
TCACATATCCGTTATTCAGCAGTTATGCACTAAAGCAGGTAGTTGACTTCAAATTATGTTTTTA
TCGGTGACACCACATGATAGATAGCCCTCTCTTTATTGTTGCCAACTACAGATTTGATCATAAC
TTCATAGTCCAAAGCATGGGACATAAAGCAACTTAAAGCATTACCTGGAACTTTTGGGGGATAG
TCATATGACTGTGCTCAACAGAAACAAGCAGTGAAGGGGGAGAGACATCAAAAACAGTATTTTC
CCCTTTGTAGTACGGCAACAGCTCATAGCTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.253797321
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017