Detail information of EPlOSAG00000013235_circ_ig.2


General Information
CircRNA Name EPlOSAG00000013235_circ_ig.2
ID in PlantcircBase osa_circ_001468
Alias NA
Organism Oryza sativa
Position chr1: 11030649-11034144  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000039349_circ_ig.1 EPlOSAG00000039349_circ_ig.2 EPlOSAG00000039349_circ_ig.3 EPlOSAG00000039349_circ_ig.4 EPlOSAG00000039349_circ_ig.5 EPlOSAG00000039349_circ_ig.6 EPlOSAG00000039349_circ_ig.7
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAGTCATATGACTGTGCTCAACAGAAACAAGCAGTGAAGGGGGAGAGACATCAAAAACAGTAT
TTTCCCCTTTGTAGTACGGCAACAGCTCATAGCTACctgagagaactctatatcaagcaatgga
ctgttgacattgacatcaataaatcctggtgaaaacataagactggaagaaccttcggtatcta
caggtagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAGAGAACTCTATATCAAGCAATGGACTGTTGACATTGACATCAATAAATCCTGGTGAAAAC
ATAAGACTGGAAGAACCTTCGGTATCTACAGGTAGGGCAGATAAGCGGTATTCACCGGCAAGAA
CCTGCAAGCGCAAGCATATCAGCAACCTTCCTAACAAGAGGGCTACACACACAAGCAATCGCTC
TTCCTAACTGGTAGAAAAAATGTTAAGTGCTACTTTGGCTTTTTTTTCATACATATACTCCCTC
CATCCCAAAATATAGCTACTTTTAGCTATGAATCTGGACGAGCTATATTTTGGGACAGAAGGAG
TAAATTATAGACCATATCAGAAAATTCTGAAGCATATGCATGCTTTGATTTGCAATAAATCATA
CAGGAATGCAATATCCATAAAGTAGTCAAATATAAATGAATCGATAGTTGTTAGCTGGAAGTAT
AAGATAATTTCCACGGTAAATAAAAGTAGAAACATACCTCAAAGCAAAATCTTCCATTTTCGCT
CACCAGTTTCCTCTGTGGCTTTACATTTTCAGGCCCATGTGTTAAAGTCACCTACCATCCCCAT
CAAAATTGTAAGGTAAAGTTTTTATGGTGGTTTATCATTTGAAACATGATACCAGGTTAGTATA
TTACCATTGATTTGGAATTTGGGGTTACTGTTCGAACAATACCGCATACATCATACCGAACTGA
TGTGATATCATCAATACTAGCCATGTTTGGCAAAATCTAATGGAAAAAACAGAGTTTAGTAAAA
AAAAGAGAAACCAGAGCCATTTAACTGGCATTTAGCAATTTAGGATGTCCCCTCAAGAAAACAC
CATTACCATGAAATTCTCCAAACGGTTGAATTTGTAATGATCCTTCTCAGCCACAATAGTATAC
TTCTTGGAGGTAACCTATGAAAGGCAACAAAATGACTATGTGGTCGAATGGAAATAATAAATTA
GATTAAAATATCATTAGACTGTGCACAAGCTATAGACTTGTTTCTATTATTATTATCATTAGAC
TGTATACAAGCTATAGACTTGTTTCAAGAACTTGAGCAATGAAGTGCTTACAAAAATGAAATTA
TGAAACTGCCGATATTCCAAATAATCTAAATGTTTTAGTTCCAAGTCATTTTATGACCTGAACT
GAACAGGGAAACGGTGCAGTTTAAAGCTTCCGTTTTATGTGCATAACATATTCCACTAGTATAC
ACTGCAGCGTGCAAATTAGTCTTATGCATCATTCTGCATAATTTTAAACTATAATAATCTTATG
CATTCACAAACCAAGAAGAACTTTATATTACAATTTTATGAGCGACAATGGTAAAAGGTTGGAT
ATTCAGCAAAATACTGCACCTTTGGGTGATTATATCAGCAAGCACTAACAAAATGTTATGACAT
GTCTAGAGAAGCAGAATAAATTTACAGGAAGTCAAGATATGTAGAGTGAATGCTGAGGGGGTGA
TTTGACAGTAATGGACCATGAATTACCCATGTGGAAACCCATGAGAACCTAGTTGAGGAAATTT
CGAAAATACCATCATAGAGATAAGTGAGTTGCAAAATACCATCATATTTGAGAATGACACTCAT
GGCCTGGACCCACATGTCACTGCCACATGCGATGGCATTTTCCAACACCATGATTTTTGGTGGT
ACCAAGTAAATTGGCCCATAAATACAAAAGTAAACTTTATTTGTCTCACTACATAAGTTTAGCA
CTGTCCATTGATTATATTCTATGAAGTACAGGGAAGTTGATCAGATTCAATACTCGCTTTAGAT
TATGTGAACAAAGTTCCCTAAAATATCCTTGCAAAAGAAAAAGATCCCTTAGGGATTAATTCTG
CTAGATCAGATCTCTGTTGAGTAGCCCAAATAGGAAACAGAAAGGAAGAATTAAACAGTGTTGG
AAAGGGCAATTGCTTTCCACTGTTTCCATAAATGCAGAGTTTATGTCAACTTTGGTGCTTTGAA
TTGGTGATACGCTTGCTCATTTTGTTCCAATATTTTTGTATGGGTGTAGAATTCATGCCTTCCA
TCAAGAGATTCAATTCTTTTACTGTGGACTTATATATATCACTAGTACAAAAAAAAAAAACAGG
CCAACAGTTTAAGATATGCATGAGTTCAATTTTCAAAAACTTTGACCACAAATATATAAGGAAG
TGAATATCATAACGGCAAGAAAATACTTACTGTGAATAATGCATTCAACAGATCACTTTTTGTA
ATCTTTTACTTATATATAATTATCAAAATTGGCACCCAATGGCACAGGCGCGCAGCTTCAAAAC
ACTACCATTTCATGTTCCACAAGGCTACATTTTAATTGTAGGGTGTTCACATCATGATGATATG
CAAAACTTTTGAAATGTGATAACTTTACCCAAGCTGATTATGGCTAATAACTACAAGCATGCAG
TTAAGAGTGCAAAATCCAGGATTCTACACAAGATATTATAATCCTCTAACTGCAGTTCCTAAAC
AAAAATTGGATCGGCTAGCGATGGAAAGCATATTAACCTTCGTCTCCAAATTGGTCAACGAATT
CATACTTCCCAATTTTCGATTCTTTTAGTATATTTGTTAAGAAAAATTTAAAATTTTAATAGTG
CTCTAAATAAATGTTGCATTCTGCATGCTTATACCACACCGAACTTGGGTAAATAAGAAACAAA
TTACCCAACAAGTATTTACTTTAAGAAAAAACAAAACTGTTCTGCACATTGATATAGAATTATT
CACAGCATTATGATGAAAATAGGTTGTACGAACAACATATGTGATGGCGAACAATTTGATAGGT
GATAGTACCTGATCAAGTCTGTAATACCCAAGATTGTCTGTTACAGCTCTCAACTGACCATCCA
CGATAACATTAGCACCTTCCACACCAGCACCATACCCATCAACAACACGCCCTCCAACAGAAAA
CCCAGTAACCTAGTAAGACATGAATGAGGAATCACTAGTCAGCTAGTGGAGAGAAGGTCCACTG
TAAGGAGTGAAAAAGACAAAATTGAATGTGTGACACTGATGAACAGATAAAAAAAAAGGAACAT
ATCAAAACTAAGATGCTTAAGCAGCTGAAAGTTTGGAAATGTCAAGTCTACATCGAGCTGTCAT
GTAATCCACCATCTGCACCCAGTAAACCTTGAAATATATTTTTTTTCATTAAATGGGCCATACA
TCTCCATTTCACATATCCGTTATTCAGCAGTTATGCACTAAAGCAGGTAGTTGACTTCAAATTA
TGTTTTTATCGGTGACACCACATGATAGATAGCCCTCTCTTTATTGTTGCCAACTACAGATTTG
ATCATAACTTCATAGTCCAAAGCATGGGACATAAAGCAACTTAAAGCATTACCTGGAACTTTTG
GGGGATAGTCATATGACTGTGCTCAACAGAAACAAGCAGTGAAGGGGGAGAGACATCAAAAACA
GTATTTTCCCCTTTGTAGTACGGCAACAGCTCATAGCTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.208248684
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017