Detail information of BGIOSGA015202_circ_g.1


General Information
CircRNA Name BGIOSGA015202_circ_g.1
ID in PlantcircBase osi_circ_014293
Alias Chr04:19424996_19428420(MH63RS2), Chr04:19415844_19419268(ZS97RS2), Chr04:19424996_19428420(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 16567343-16570767  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA015202
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015202_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA015202-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATACAGCTTCAGTGATCAGACGCCCTTGATCTACCATTTCTCCATATGAGATGAGACCAGCAT
CTGGCAATCCAAGTCGTGCGGCAGAAACACAGAAACcaggtatcccttcatttatcttctgcgt
tccacttttttctgtgatctttaatcgaagtacaatatttgtggataatggctgggcttgctgg
actgttgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGGTATCCCTTCATTTATCTTCTGCGTTCCACTTTTTTCTGTGATCTTTAATCGAAGTACAAT
ATTTGTGGATAATGGCTGGGCTTGCTGGACTGTTGCATATTGCTTTTCTTCTTTGTAATATCGG
TTAAACCCTAGAGTATCCTTGATCTCCTGAAAAGATGGCAAGCTACCAGGTCGGGGTGCACCAG
TACTTTTTATCGCAATCAGAGCATCCTGCAGATCAAAGATTCATGTATTATGAAATACAAATAG
TGATTCCACACCAAATTGAATAGCTAACGAGTGTAACTAGTCTTGTACTCATGCACAATGGCAC
GTGAATATGTGCATGCATTGAGAGATGTTAGGCTCCTCCCTGATGTTTTTCCCCCATACAGTAG
CAGACATTGGCATCAAACAAAACTTAGGCCCTGTTTAGTTCCCAAAACAACTTTTCACCCATCA
CATCGAATGTTTGGGCACATGCATGGAGTATTAAATGTGGACAAAAAAAAACCAATTACACAAT
TGGCGTGTAAATTGTGAGACGAATCTTTTAAGCCTAATTACGCAATGATTTGACAATGTGGTGC
TACAGTAAACATTTGCTAATGACGGATTAATTAGGCTTAATAAATTTGTTTCGCAGTTTCCTGG
CGGAATCTGTAATTTGTTTTGTTATTAGACAACGTTTAATACTTCAAATGTGTGTCCGTATATC
AGATGTGACACCCCAAAACAAAAAATTTTGGGAACTAAACCGGGCCTTAATTGAGGAAGATCAC
ATGTACACAGAGGTACCATAGGATTAAAAAAATGCAGTGAAATAAGATTGAAACAACTAAATAA
TTATCAATCAGGCAGAATAAATAACAAACAGGAATTTTAAAAAAAAAAACCATGCGCCCTTGCT
CAAACAAAATAGACATGCAAGTAATTTTGCAGGACATTCAGAAGTGTCCAGGATAAGAGCTGTA
AACATAATGAACAAACCTCCATTGCGAGCATTGATACCCCAATCAGGGACAATGGGTAGACTAC
GAGGCTAAAACCAATCTCCTGAAGTTCAGCAGGGCTCAATATGGGAGTTTTACCACCACCTTCT
AGCATGTTTGCCTGGAGAACAAAATACAGGGCTATAAACTCTCCTCACTTCAATGCTAGAGAAA
AGTAACAGGCTAATAGCTCAGAGACAAATAGAGAAGAGGACATTTGAAAGCAGTAATTATAAAT
GATTATGATATAACAAAGCTTAGGGTTACATCTTCAACTATGCACACTGAAAAATTTGCGAAAA
TCTATGGAACTTGCCAATTAGAAGTGGGTTTACACCCATGGTTGTGCTGTTCATGTTCAGAACT
TCAGCTCAATAGAAAAAATATAGAGTGCAATCCAAGAAAGAGTATTCCACTATTTTGTTAATGA
AATTCAAAGAACCTTGGAATAGCTATAAACTCTTACATGGTTATCTCAAATTTTCAAGTATCTA
GAAAAGGCAAAAGAACAGAGTGCATCTAACCATCTTTGGAACTTTAGGTGAAACCGCACAAAAT
GCTTTCATCTCTTCTATTGAAGCAAGAGCATCAATGAATAGAACATCTGCTCCAGCATCGGCAA
AAGCCTGTACCCTCCATAGCGCTTCATCAATAGAGATAGCTTGACGAGAGTCTGACCTTGCAAT
GATAACAATGTCAGAACCACTCTCTTTCCTAGCATCTACGGCAGCTTTTATGTGCATGATAGCA
TCCTCCCTTGAGATAACTTTCCTTCCTTCAGTATGTCCACATGCTTTTGGTGCCACCTTCAAAA
ATCATGTGTCATATCATTAACATGGAAACTAAAAAGGTAAAGAAATATCAATCTTGGAAGTCTT
CTGCACATATATCAATAATGGATTAAGCTAGAATGAATAAAGTAGCTACAGTAGTTTGAATAGC
ACAGATATGTGAAAGAACTAAGTATAATTTAATTACTGTAGGTGAAACATTTTTATCATAATGC
AATAGTCGTGCTCAACAGATTGAACATTTGAGCTTAGTGAATTTGTGCTCAGGCTGTGATGTTA
ACATGATAGCTTAATTTGGACTAAGTATCACAGGACAGATCAATACGAATATATATAAAAGTTA
AAATATTTAAATAGCACCTCTAGCCTAGCAGTTACAGTGCTCAAGTAGCACCTCTAGGCCCTAA
GTTCGACTCCCCAAGGGAGCGAATTGCAGGCCTACTTAAAAAAAGTCACTCGCTGGCCCCTCAT
CAAAACAGGTGTCAAGAACCAATCCATAGTGGGTGACTCCACATGTGGGGAGCAGAGCAGGGTT
CGTGGCTTTCTCAGTCAGTTTTATTGTGGCTTCTTCTTAATGAAAAGCCGTGGGGACAGTCATT
CCCCTGCCGGTCTAGTTCTTTTTTTTAAAAAAAAAAATAGGAGTAAGTGTCACTCACTGGAGAG
ATCAATATAGTTAGGTTGGAGCACTGCTATGGCCGGATTTTCAAAAGAAACAGTGAATACTTTA
ACTTTACTTTCTTGCCCTTGCAACACCCATTGTGACGTTTGCGTCAAAAAAAAACACCCATTGT
GACGTGCAATGATGCATATTAATTATTATGTGGCTCTCTTTTTTTTTTCTCAAAAACACATGAG
TTGTGTTTCATCTCATTAAGAAGAAAGAAAATATTAGTACTAAGAAGGGCTCAATGAAACAACC
CCAATACAACCCAAGAATACATCCCACAAGCAATGCTCAACCACAACACGCCCTACATCAGGCA
TCTGGTGTCAACCTCTCCACTATGTACTTATTGAAGCTCTTGATTTCCTATCTAAAGGGAGGCT
CCTACTAAACAAATTCTCATAATTCAGTGCCTTGGAACTGATGTCCCAATCTTAGCCACCAAAC
GGTATCTTCCATAGCTATACGACAGTAAAATTCCTATAGAATTGTACACTATACAGCCCAACAT
TGAATAACATATTCATACATAAAAATTAAGCAAGGAACTGAGAAAGTAGAGCTCTCAACATTAA
AAGTGATCTCAAATGTCAGTACAGGAAATTGTAGCCTTATATAACAAATTAATTGAGATTCATA
AGTTTAGGATGAAGGGATGTTCACCAAAAGGTCTAATGTATAAAAAAAATGTTACAAATATGAC
CATAGATTGTTAAGACAACGGAGAGAGCCAATCCATGAGAAGATCATTTGGTGATACTTAGGAG
TTAGGAAGCATACCTGATCTTCGAGCATGATTCCAGCAAAACCAGCATTAATATACCCTTTTAC
GGTTCTCTTAATGCTCATAGCATTTCCATAGCCATTATCACCATCGCCGATAACTGGGAGTGAT
ACAGCTTCAGTGATCAGACGCCCTTGATCTACCATTTCTCCATATGAGATGAGACCAGCATCTG
GCAATCCAAGTCGTGCGGCAGAAACACAGAAAC
Conservation Information
Conserved circRNAs osa_circ_023600
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021