Detail information of BGIOSGA015202_circ_g.2


General Information
CircRNA Name BGIOSGA015202_circ_g.2
ID in PlantcircBase osi_circ_014294
Alias Chr04:19425971_19428420(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 16568318-16570767  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA015202
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015202_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA015202-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATACAGCTTCAGTGATCAGACGCCCTTGATCTACCATTTCTCCATATGAGATGAGACCAGCAT
CTGGCAATCCAAGTCGTGCGGCAGAAACACAGAAACcctccattgcgagcattgataccccaat
cagggacaatgggtagactacgaggctaaaaccaatctcctgaagttcagcagggctcaatatg
ggagtttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCCATTGCGAGCATTGATACCCCAATCAGGGACAATGGGTAGACTACGAGGCTAAAACCAAT
CTCCTGAAGTTCAGCAGGGCTCAATATGGGAGTTTTACCACCACCTTCTAGCATGTTTGCCTGG
AGAACAAAATACAGGGCTATAAACTCTCCTCACTTCAATGCTAGAGAAAAGTAACAGGCTAATA
GCTCAGAGACAAATAGAGAAGAGGACATTTGAAAGCAGTAATTATAAATGATTATGATATAACA
AAGCTTAGGGTTACATCTTCAACTATGCACACTGAAAAATTTGCGAAAATCTATGGAACTTGCC
AATTAGAAGTGGGTTTACACCCATGGTTGTGCTGTTCATGTTCAGAACTTCAGCTCAATAGAAA
AAATATAGAGTGCAATCCAAGAAAGAGTATTCCACTATTTTGTTAATGAAATTCAAAGAACCTT
GGAATAGCTATAAACTCTTACATGGTTATCTCAAATTTTCAAGTATCTAGAAAAGGCAAAAGAA
CAGAGTGCATCTAACCATCTTTGGAACTTTAGGTGAAACCGCACAAAATGCTTTCATCTCTTCT
ATTGAAGCAAGAGCATCAATGAATAGAACATCTGCTCCAGCATCGGCAAAAGCCTGTACCCTCC
ATAGCGCTTCATCAATAGAGATAGCTTGACGAGAGTCTGACCTTGCAATGATAACAATGTCAGA
ACCACTCTCTTTCCTAGCATCTACGGCAGCTTTTATGTGCATGATAGCATCCTCCCTTGAGATA
ACTTTCCTTCCTTCAGTATGTCCACATGCTTTTGGTGCCACCTTCAAAAATCATGTGTCATATC
ATTAACATGGAAACTAAAAAGGTAAAGAAATATCAATCTTGGAAGTCTTCTGCACATATATCAA
TAATGGATTAAGCTAGAATGAATAAAGTAGCTACAGTAGTTTGAATAGCACAGATATGTGAAAG
AACTAAGTATAATTTAATTACTGTAGGTGAAACATTTTTATCATAATGCAATAGTCGTGCTCAA
CAGATTGAACATTTGAGCTTAGTGAATTTGTGCTCAGGCTGTGATGTTAACATGATAGCTTAAT
TTGGACTAAGTATCACAGGACAGATCAATACGAATATATATAAAAGTTAAAATATTTAAATAGC
ACCTCTAGCCTAGCAGTTACAGTGCTCAAGTAGCACCTCTAGGCCCTAAGTTCGACTCCCCAAG
GGAGCGAATTGCAGGCCTACTTAAAAAAAGTCACTCGCTGGCCCCTCATCAAAACAGGTGTCAA
GAACCAATCCATAGTGGGTGACTCCACATGTGGGGAGCAGAGCAGGGTTCGTGGCTTTCTCAGT
CAGTTTTATTGTGGCTTCTTCTTAATGAAAAGCCGTGGGGACAGTCATTCCCCTGCCGGTCTAG
TTCTTTTTTTTAAAAAAAAAAATAGGAGTAAGTGTCACTCACTGGAGAGATCAATATAGTTAGG
TTGGAGCACTGCTATGGCCGGATTTTCAAAAGAAACAGTGAATACTTTAACTTTACTTTCTTGC
CCTTGCAACACCCATTGTGACGTTTGCGTCAAAAAAAAACACCCATTGTGACGTGCAATGATGC
ATATTAATTATTATGTGGCTCTCTTTTTTTTTTCTCAAAAACACATGAGTTGTGTTTCATCTCA
TTAAGAAGAAAGAAAATATTAGTACTAAGAAGGGCTCAATGAAACAACCCCAATACAACCCAAG
AATACATCCCACAAGCAATGCTCAACCACAACACGCCCTACATCAGGCATCTGGTGTCAACCTC
TCCACTATGTACTTATTGAAGCTCTTGATTTCCTATCTAAAGGGAGGCTCCTACTAAACAAATT
CTCATAATTCAGTGCCTTGGAACTGATGTCCCAATCTTAGCCACCAAACGGTATCTTCCATAGC
TATACGACAGTAAAATTCCTATAGAATTGTACACTATACAGCCCAACATTGAATAACATATTCA
TACATAAAAATTAAGCAAGGAACTGAGAAAGTAGAGCTCTCAACATTAAAAGTGATCTCAAATG
TCAGTACAGGAAATTGTAGCCTTATATAACAAATTAATTGAGATTCATAAGTTTAGGATGAAGG
GATGTTCACCAAAAGGTCTAATGTATAAAAAAAATGTTACAAATATGACCATAGATTGTTAAGA
CAACGGAGAGAGCCAATCCATGAGAAGATCATTTGGTGATACTTAGGAGTTAGGAAGCATACCT
GATCTTCGAGCATGATTCCAGCAAAACCAGCATTAATATACCCTTTTACGGTTCTCTTAATGCT
CATAGCATTTCCATAGCCATTATCACCATCGCCGATAACTGGGAGTGATACAGCTTCAGTGATC
AGACGCCCTTGATCTACCATTTCTCCATATGAGATGAGACCAGCATCTGGCAATCCAAGTCGTG
CGGCAGAAACACAGAAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021