Detail information of AT5G25060_circ_g.4


General Information
CircRNA Name AT5G25060_circ_g.4
ID in PlantcircBase ath_circ_040317
Alias NA
Organism Arabidpsis thaliana
Position chr5: 8637677-8638768  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT5G25060
Parent gene annotation Protein RRC1
Parent gene strand -
Alternative splicing AT5G25060_circ_g.1 AT5G25060_circ_g.2 AT5G25060_circ_g.3 AT5G25060_circ_g.5 AT5G25060_circ_g.6 AT5G25060_circ_g.7 AT5G25060_circ_g.8 AT5G25060_circ_g.9
Support reads 3
Tissues seedlings
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT5G25060.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAACATACAGATTCGTAGTTTGTGGGTCACCATCGTCAAACGATCCTGGCCTCCCACTGGGATC
AAAATCATCAGGTAGCTCATCAAAGCGGCTAGATGGcagctcagaattttgatttggaacagaa
gttattatcggtggacccgtttgaccagaaaaaaccaagttgcagccctgccaatgaaatattt
aaagtttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGCTCAGAATTTTGATTTGGAACAGAAGTTATTATCGGTGGACCCGTTTGACCAGAAAAAACC
AAGTTGCAGCCCTGCCAATGAAATATTTAAAGTTTTTAGAGTTAAACTAAAGAGATATAAAACT
GGCAGAACTTTTTATGCAAAAAATGGCAAGGAAATACCAATAAATTCAGAGATCGGGCCATACA
TAGGTTAGTGAACAGAATTAAAGAAGAAATATATCTAGAAGAGCAGCACAGGATGCATCACAAA
CCTCCTTACTCCGAATAGCCATATGTCCAGGTGGTGGAGCGGGTAATGCTTGTGACGGTAGAGA
AACTGCTTTACCCCATCCAATTTTCAGTTCATACTCGTACACGATGATCCCTGTAAAATTGGAA
ATTTTCCTTCATAACTTTCTTTAACATTGTCACATGCAATCAGGTATATAGTTAGTACAAAACC
AGTCGACTATAGACAGATAGACTAGTCAATAATGCCAGAAGGGTCATTAGTTTCCAACATTAAT
CAACCACTGGGTATATGTTTCGATCAACAAGGAAACCAATCAAATTTTGTTGAACTGAAGTACT
CAAACTAATATGCCTAAAACGTTTCTTGTTCAACTATCCATTTTAATCTCTCATATATATCACA
CATGTTGCATCTACCTAGAAAATGATTTCTAACCAAGGCTAAAATAGAGAGTCCTAGATAGAAG
AGAGGCTAGCTAACCTTGCATTTCATCTTTTGCAGCTTGTCCATCAGCCCTATTCATGAAGGAA
ACAAAGCCACAGTTTCTTTGTCGCCTCTTCTCCTCATCTGTTCTTGGCCACATAATCTTGACAC
TAGCTATGGGCCCAAATCTTCCGAAAGTGCGCAGAAGGAAATTCTCATCAACCTACGTGAGCAT
AAAATTATACCTTATGAATATTAAGAATACAATGGCGAGAGAAAACAACATATGATCCAAGTAA
GAAAAGAAAAAACACCTTTGGGGACAGATTCCCAACATACAGATTCGTAGTTTGTGGGTCACCA
TCGTCAAACGATCCTGGCCTCCCACTGGGATCAAAATCATCAGGTAGCTCATCAAAGCGGCTAG
ATGG
Conservation Information
Conserved circRNAs NA
PMCS 0.188895256
Functional Information
Coding potential Y
Potential coding position 8638498-8637679(-)
Potential amino acid sequence MWPRTDEEKRRQRNCGFVSFMNRADGQAAKDEMQGIIVYEYELKIGWGKAVSLPSQALPAPPPG
HMAIRSKEGCNLVFSGQTGPPIITSVPNQNSELPSSRFDELPDDFDPSGRPGSFDDGDPQTTNL
YVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQAAKDEMQG
IIVYEYELKIGWGKAVSLPSQALPAPPPGHMAIRSKEGCNLVFSGQTGPPIITSVPNQNSELPS
SRFDELPDDFDPSGRPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTD
EEKRRQRNCGFVSFMNRADGQAAKDEMQGIIVYEYELKIGWGKAVSLPSQALPAPPPGHMAIRS
KEGCNLVFSGQTGPPIITSVPNQNSELPSSRFDELPDDFDPSGRPGSFDDGDPQTTNLYVGNLS
PKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQAAKDEMQGIIVYEY
ELKIGWGKAVSLPSQALPAPPPGHMAIRSKEGCNLVFSGQTGPPIITSVPNQNSEL(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017