Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G25060_circ_g.4 |
ID in PlantcircBase | ath_circ_040317 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr5: 8637677-8638768 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT5G25060 |
Parent gene annotation |
Protein RRC1 |
Parent gene strand | - |
Alternative splicing | AT5G25060_circ_g.1 AT5G25060_circ_g.2 AT5G25060_circ_g.3 AT5G25060_circ_g.5 AT5G25060_circ_g.6 AT5G25060_circ_g.7 AT5G25060_circ_g.8 AT5G25060_circ_g.9 |
Support reads | 3 |
Tissues | seedlings |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT5G25060.1:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.188895256 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8638498-8637679(-) |
Potential amino acid sequence |
MWPRTDEEKRRQRNCGFVSFMNRADGQAAKDEMQGIIVYEYELKIGWGKAVSLPSQALPAPPPG HMAIRSKEGCNLVFSGQTGPPIITSVPNQNSELPSSRFDELPDDFDPSGRPGSFDDGDPQTTNL YVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQAAKDEMQG IIVYEYELKIGWGKAVSLPSQALPAPPPGHMAIRSKEGCNLVFSGQTGPPIITSVPNQNSELPS SRFDELPDDFDPSGRPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTD EEKRRQRNCGFVSFMNRADGQAAKDEMQGIIVYEYELKIGWGKAVSLPSQALPAPPPGHMAIRS KEGCNLVFSGQTGPPIITSVPNQNSELPSSRFDELPDDFDPSGRPGSFDDGDPQTTNLYVGNLS PKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQAAKDEMQGIIVYEY ELKIGWGKAVSLPSQALPAPPPGHMAIRSKEGCNLVFSGQTGPPIITSVPNQNSEL(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Pan et al., 2017 |