Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G25060_circ_g.3 |
ID in PlantcircBase | ath_circ_040316 |
Alias | 5:8636736-8637280 |
Organism | Arabidpsis thaliana |
Position | chr5: 8636736-8637280 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ; CIRI2 |
Parent gene | AT5G25060 |
Parent gene annotation |
Protein RRC1 |
Parent gene strand | - |
Alternative splicing | AT5G25060_circ_g.1 AT5G25060_circ_g.2 AT5G25060_circ_g.4 AT5G25060_circ_g.5 AT5G25060_circ_g.6 AT5G25060_circ_g.7 AT5G25060_circ_g.8 AT5G25060_circ_g.9 |
Support reads | 1/2 |
Tissues | seedling;leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT5G25060.1:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.376591347 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Philips et al., 2020 |