Detail information of 1_circ_ag.9


General Information
CircRNA Name 1_circ_ag.9
ID in PlantcircBase ath_circ_008182
Alias 1:22351447-22356222
Organism Arabidpsis thaliana
Position chr1: 22351447-22356222  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ; CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.4 1_circ_ag.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G60710_circ_g.1 AT1G60710_circ_g.2 AT1G60710_circ_g.3 1_circ_ag.4 1_circ_ag.5 1_circ_ag.6 1_circ_ag.7
Support reads 2
Tissues flower
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATATTCAGGATCTCCTCTGACCTCTCTTTTCCCCTCTGCATAACTGATTCCAAATTTGGTCGC
AAGTTCCACTTTTTCTCTCACCCCATCCTTGAGAGCctttccgaggagaatttcattggtttca
ggaccatacatgtcagaagtgtcaaggaaagtaacaccggagtgaatagcgtggtggatgagag
cgatggct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTCCGAGGAGAATTTCATTGGTTTCAGGACCATACATGTCAGAAGTGTCAAGGAAAGTAACA
CCGGAGTGAATAGCGTGGTGGATGAGAGCGATGGCTTCAGTTTCCGGCTTGGAAGCACCGTAAT
GACCGGTGAGTCCCATGCAACCAAGGCCTTGCGCCGATACCTCTAGGCCTTGACTTCCTAGCTT
TATCCTCCTCACTCTGCAAGATTCCGCCATGGATTTCTCTCACACAAATCTCTCTCTCTATCTC
TCGTGTATCAATGGCGAGTTTTGAATTGGAGTGGTCGAGTGGAGTGGTTTAATTTGACAGATGA
GTGATGATGATGATTGAACAAAAAAGCCAATAGGTGGCGCAGTTTTAATTTTAACGCTCAAATC
CTGGTTTGACTAAACCATCACTTTTAAACCGAAAAATATCAATTACGTTTTAATTAAACCGAAA
ATAAGATAATCGATGGGATCATTCATCCATTGGTATTAGGTGTTTAAACTCCTAACCCTAAGCC
AGGTGGGACATTTAAATCATGCGGATGGGTCACTAAGACTATGAAGAGAGTGGTATAGCTAAAG
GTATTCACAGAATCTATTCACACCATCTGAATTTATTGTCGTCCTCGCTCTTCCTCCGTGTGTT
GTTCTTCAAGAATTGTCCCACTGCTTCTTTGTTAATCTTGAACACAAAGGTTATTCCTCTAATC
TGCAAAATTTGGGCGGTTCTAGTTATAGATAGAAAGATGCAGAAACACACTTGTACAAAGCATA
AGCTGGTGCTTACATTGATTGAACTACACGATGTGAGGGTTACAATCTGGCCTCTATCGAGTTT
TCCGCCATTTACAAGGATATGTTGCTTTCCAAGGTTCTTTAGAGAGAATGATCCGTAGTTCTCT
AGCTTAACCAATGCCTTGTTCAAAACATGGAGACAGAAAAGTATAGCACATTAGCAACTAATTA
GCAAGGAGGTAAACTAAATTTAATTTGGGAAAGGGGAAGAGGATCACCTGACGCCGAGATATCT
TGCTCCCATAATTATATTTACCCAAGTCAATGTCAACATTCAGGCCACCAGATGATCTCCCAAT
AATTACCTATGACAAATAAATGATCATCTGCCATGTAACTAAGAGGATTTGATATGACATGAAA
ACATCCAGGCAGAAGAAAATGATTTTTCTTAACATACCTCGCGTTTTCTGACAAAATGCTTTGA
ATCAGGACAATGCAGGACGGCAATTGCCCCATGAAACATAATTGCTCTTTGCATTGAAGTTCTT
GTGCATTGTTCCAATCCAATTAATGCATGTCTTGGGTGCTTAGACATGTTCCATTCTAGGTATC
AGGAAGCGAACCATAGTTGAGACAACCATAGTTTGAGAGAGACATAACTATTTTTTAGCATGCA
ACAGTGTGAACTAGTTACATGATTGGTTGAAAATCAACAGCCATATGGCTTACCTTCCCTGTTG
AAGCATGAATCTGAATCATCTGGGACTAGATTCAATTTGCGGATCTGGAGATATTTTCATGTGA
TATCTATCAGAAATCAGAAAAACACATTGAATGATAATGTGCGTAAAGAGTAATCAGGGTTTAC
CATTGCATCAATGTCAATCTCTTCTTCACCATCCACTTCTTCCTGATATAGAGTTGATGGGGGT
TGAGAAAGTTCTGCGTCCCTATCCTCAGAGGTAGTAGCATTTGCATATAATTGTTCATCCAAAG
AAGTACAAGCACCTGAGCTATCTTCCATTAGAGGTAAGTTTCTGAGTGCAGCTATAGAGCAACA
AACTGACCATGGCCTTCTAGGTCTTTCAAGAGTTTTTGTTAAAGGTATTGGAGAGATTTCAAGA
CCAATATTATCCTCATGAACGTTGTATTCATTTATACATCTGTCGATCTGATGACGTGAACACG
TTTCTAGCAATAAGCTTTCGCAGCCATTAGGAGGAACAATGCTGATCGGTATTGGTTCATCGTC
TTTATTCCACAGTCTATGATCATCATTGATGCACATTATCTCCATAGACCCCTGCATGTTGATT
TCATCTCCACATCTAACTTCAATTGCAGATGATTTGTCGCCATCATTCTTGAAAATATCAGAAT
TGCTTGGGACACCTGAATCTTCTTTAGACCTTACATCATTCTTCTCGTTATGAGTTTCTGAAGA
CCACTTACTAACCAGAGTTCCATCATCCTCACTGGACCATATAGACAAAGATTTCGATCCGGTT
ATCAAATCATTGTCTTCAGGAACATGCTCTGATATAACATCAAACTCTGAAGATTCAGATATGT
CTGTGTCACTGCCACTTGCGTCTACAATTGAACCCTCATCCAGAGGATCATAAGGATTATCCAT
AAGATTTTTAAACCAGAAATCACTTTCAGGTCTCAGACAATTTCGTATATCCTCATCACCATCA
CCAATATCTGCATTATTATCTAAATCCGGAAACATATCATCATCAACAGACTTGTGCCTACATG
TTCTCTTTCTCATGACAGAGAATAGACTTTCAACTTTCCTTTTGACATTGGAACTCTCTGATGT
ATCTTCTTCACCAGAAATTTTGACATCACCACCCTGTCATGTGACAAAAGACTAAAATCAGAAA
AAGGCTTGTGCAAATTGCTCCATTGAGAACTAAAAATCTGGGATCTAATGCAAATAGTGGGCAA
AAAAAAAGCCATTTCAACCATGGAGATTCTTAAGCTACTTAAGAGGATCGATCATTTAGTGTAA
GTGTAGCAGATAAAAACGCGAAATTCATGAAATGAGATGATCACGTCATTTCCTTTATATATGG
TTCAATGTCTGCAATACTGATGAGAAAGATATATAGATGAATAGAGAGAGACGCACGAAGAGAT
CCTTATTGACGAAGAGATGCTCAGATACTCGAAGACCTTCTTCCATTTTCACATTTAGTTGAGG
AATTGAACGACCCAACTCGGTTCCAAGCAACGGTGGTGACTGTTTCTGCCCAAAATTTATCGAA
GAGAAGAGCTGAGACTGCAATCAGCTGAGTGAAGTTGGGTTGATGAAGATGAACACACACAAAA
AAACACAATTGGGTCGCTTAACCGTGTTGGACCAAAAATAACACTCGAATCCTGGTTTAAGTCC
TAAACAAAACCGAAAATAACATAATGAATGATTTTACCATTTGAAACTCTAGAATTGGTAAAGA
ATCGAAAGATGATCAGAAGTTATTAGTTGAATCTGATAGAGAAGAAGCTGAATTGAGTAGAAGT
TTATAGAGGACAAGCTGGTTATCACCATTGAGACTCTGAATTGGTAAGAGAAGCACAAGTTATT
GAGTAGAAGATGAATTTTACAATATAGATAGCCTTTTTTGGTAAGGTATGTATCACAACACTTT
ATTTATAGAGTTTGGTTACAATGTATGGAAATGTAAAATTGAAGTTTTCACTTGGGGAACTCTA
CATTATTTATTCTTCAAGGCATTAACCATGATACTTGGGTTTCCGTGGGAATGATACTCTACTC
TCGAAGACGCACCATTATTCCCCAACACACTGATCTAGCTGACAGAAAGTTAAGACCACTTCAA
TGTCATGATGCACCACCACAACCGTAGAAACTTCAGCCGGTTTTAAGCGGCTTTCCAAGCAGAC
AATGGTGGTGTCTCAGCGTTCTTGAAAGTTGGTATCATGTTACTGTATCTATCTCCTTTCACAA
AACCTGGTTGGGCAATGGCCTCAAGCTCAGTCATCTCTTCAGGAGTGAGTTTCACTGACAAAGC
TCCAATGTTCTGTTTGAGGTTCTCGATCTTAGTGGTTCCTGGGATAGGGCAAACGTCATCTCCC
TGGTGATGAACCCATGCCAGGGCTAGTTGTCCAGGAGTGCACCCTTTCTTCTCCGATATTGCAC
AAACTTTTTCATAAACAATCTTGTTGTGGTCTAAGTTTTCCTCTTGGAATCTTGGTAGAGCCTG
CAATAAGTGGGTTTATATAAAGCCATTTGATTAATCCACAGCTTATCTAAGGCTCATCAGCAAA
CAAGTCAAACAAAGCCAATGTACTTGCCTTTCTGAAGTCATCCTTTTCTAGGTTCTCAACAAGC
TTGGGTCCAGATGCGAAGAAACCTCGTCCTAGAGGACTGTAAGCAACAATCCCAATCCCAAGTT
CCCTGAAGAAGGAAAGAGAATTTGAAGTTACATGATCGACAGATATTGCACCAAGAAAATCGGA
TGACATCTGAATACATACCTGCAGGTCGGAATGATTTCTTCTTCCACATCTCTCGTCCACAAGG
ACCATTCTATCTGCACGGCAGTAATTGGGTGAACAGCATGTGCTCTTCTGATAGTTGAGGCAGA
GGCTTCAGACAAACCAATGTACTTTATTTTACCCTCTTCAACCAGCTTCTTCAGTTCTCCCATC
TTGGAATTGACAGACAAAAAAATGGTTTAGTGCAGCAAAAGATGCCATCTTTAAATAAAGGTCA
GGAAGTAGAGTTCAGAACCAGAGTCTATTCAAACGATTTCATTAGAAAGTTATCAAAACCATTA
AGTAGGAATGGCAAGAGGGCTAAGGGCTTACAGTGATTTCGATAGGGACACGAGTATCGACACG
ATGCTGATAATAGAGATCGATGCAGGCAATATCTAGCCTCTTTAAACTTGCCTCACAAGCAGCC
CTTACATATTCAGGATCTCCTCTGACCTCTCTTTTCCCCTCTGCATAACTGATTCCAAATTTGG
TCGCAAGTTCCACTTTTTCTCTCACCCCATCCTTGAGAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.723056054
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020