Detail information of 1_circ_ag.8


General Information
CircRNA Name 1_circ_ag.8
ID in PlantcircBase ath_circ_008181
Alias NA
Organism Arabidpsis thaliana
Position chr1: 22351085-22355861  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.4 1_circ_ag.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.9 AT1G60710_circ_g.1 AT1G60710_circ_g.2 AT1G60710_circ_g.3 1_circ_ag.4 1_circ_ag.5 1_circ_ag.6 1_circ_ag.7
Support reads 4
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGAACAGCATGTGCTCTTCTGATAGTTGAGGCAGAGGCTTCAGACAAACCAATGTACTTTAT
TTTACCCTCTTCAACCAGCTTCTTCAGTTCTCCCATagtgatttcaataggaacacgagtatca
atccgatgctgataatacagatcaatgcaggtaacatctagtctctttaaactagcctcacagg
cagctcta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTGATTTCAATAGGAACACGAGTATCAATCCGATGCTGATAATACAGATCAATGCAGGTAACA
TCTAGTCTCTTTAAACTAGCCTCACAGGCAGCTCTAACATAAGCAGGATCTCCCTTAATCTCTC
TGTTTCCCTCTGCATAACTGATTCCAAATTTGGTCGCAAGCTCCACTTTCTCCCTCACACCATC
CTTAAGAGCCTAACAGCATTCAAAATTTCAATAATGATTGATCAATCATTCCCATCTCTAAGTT
TTCCCAACAGAGAACGAATTCAAATTTGTTGGACAATTTCTTCGAAATTTAACCATCTAAAAGC
GGAAAGGTCAGATGGCAGATTGGGGAATTTCGAAAATAGAACCTTTCCGAGGAGAATTTCATTG
GTTTCAGGACCATACATGTCAGAAGTGTCAAGGAAAGTAACACCGGAGTGAATAGCGTGGTGGA
TGAGAGCGATGGCTTCAGTTTCCGGCTTGGAAGCACCGTAATGACCGGTGAGTCCCATGCAACC
AAGGCCTTGCGCCGATACCTCTAGGCCTTGACTTCCTAGCTTTATCCTCCTCACTCTGCAAGAT
TCCGCCATGGATTTCTCTCACACAAATCTCTCTCTCTATCTCTCGTGTATCAATGGCGAGTTTT
GAATTGGAGTGGTCGAGTGGAGTGGTTTAATTTGACAGATGAGTGATGATGATGATTGAACAAA
AAAGCCAATAGGTGGCGCAGTTTTAATTTTAACGCTCAAATCCTGGTTTGACTAAACCATCACT
TTTAAACCGAAAAATATCAATTACGTTTTAATTAAACCGAAAATAAGATAATCGATGGGATCAT
TCATCCATTGGTATTAGGTGTTTAAACTCCTAACCCTAAGCCAGGTGGGACATTTAAATCATGC
GGATGGGTCACTAAGACTATGAAGAGAGTGGTATAGCTAAAGGTATTCACAGAATCTATTCACA
CCATCTGAATTTATTGTCGTCCTCGCTCTTCCTCCGTGTGTTGTTCTTCAAGAATTGTCCCACT
GCTTCTTTGTTAATCTTGAACACAAAGGTTATTCCTCTAATCTGCAAAATTTGGGCGGTTCTAG
TTATAGATAGAAAGATGCAGAAACACACTTGTACAAAGCATAAGCTGGTGCTTACATTGATTGA
ACTACACGATGTGAGGGTTACAATCTGGCCTCTATCGAGTTTTCCGCCATTTACAAGGATATGT
TGCTTTCCAAGGTTCTTTAGAGAGAATGATCCGTAGTTCTCTAGCTTAACCAATGCCTTGTTCA
AAACATGGAGACAGAAAAGTATAGCACATTAGCAACTAATTAGCAAGGAGGTAAACTAAATTTA
ATTTGGGAAAGGGGAAGAGGATCACCTGACGCCGAGATATCTTGCTCCCATAATTATATTTACC
CAAGTCAATGTCAACATTCAGGCCACCAGATGATCTCCCAATAATTACCTATGACAAATAAATG
ATCATCTGCCATGTAACTAAGAGGATTTGATATGACATGAAAACATCCAGGCAGAAGAAAATGA
TTTTTCTTAACATACCTCGCGTTTTCTGACAAAATGCTTTGAATCAGGACAATGCAGGACGGCA
ATTGCCCCATGAAACATAATTGCTCTTTGCATTGAAGTTCTTGTGCATTGTTCCAATCCAATTA
ATGCATGTCTTGGGTGCTTAGACATGTTCCATTCTAGGTATCAGGAAGCGAACCATAGTTGAGA
CAACCATAGTTTGAGAGAGACATAACTATTTTTTAGCATGCAACAGTGTGAACTAGTTACATGA
TTGGTTGAAAATCAACAGCCATATGGCTTACCTTCCCTGTTGAAGCATGAATCTGAATCATCTG
GGACTAGATTCAATTTGCGGATCTGGAGATATTTTCATGTGATATCTATCAGAAATCAGAAAAA
CACATTGAATGATAATGTGCGTAAAGAGTAATCAGGGTTTACCATTGCATCAATGTCAATCTCT
TCTTCACCATCCACTTCTTCCTGATATAGAGTTGATGGGGGTTGAGAAAGTTCTGCGTCCCTAT
CCTCAGAGGTAGTAGCATTTGCATATAATTGTTCATCCAAAGAAGTACAAGCACCTGAGCTATC
TTCCATTAGAGGTAAGTTTCTGAGTGCAGCTATAGAGCAACAAACTGACCATGGCCTTCTAGGT
CTTTCAAGAGTTTTTGTTAAAGGTATTGGAGAGATTTCAAGACCAATATTATCCTCATGAACGT
TGTATTCATTTATACATCTGTCGATCTGATGACGTGAACACGTTTCTAGCAATAAGCTTTCGCA
GCCATTAGGAGGAACAATGCTGATCGGTATTGGTTCATCGTCTTTATTCCACAGTCTATGATCA
TCATTGATGCACATTATCTCCATAGACCCCTGCATGTTGATTTCATCTCCACATCTAACTTCAA
TTGCAGATGATTTGTCGCCATCATTCTTGAAAATATCAGAATTGCTTGGGACACCTGAATCTTC
TTTAGACCTTACATCATTCTTCTCGTTATGAGTTTCTGAAGACCACTTACTAACCAGAGTTCCA
TCATCCTCACTGGACCATATAGACAAAGATTTCGATCCGGTTATCAAATCATTGTCTTCAGGAA
CATGCTCTGATATAACATCAAACTCTGAAGATTCAGATATGTCTGTGTCACTGCCACTTGCGTC
TACAATTGAACCCTCATCCAGAGGATCATAAGGATTATCCATAAGATTTTTAAACCAGAAATCA
CTTTCAGGTCTCAGACAATTTCGTATATCCTCATCACCATCACCAATATCTGCATTATTATCTA
AATCCGGAAACATATCATCATCAACAGACTTGTGCCTACATGTTCTCTTTCTCATGACAGAGAA
TAGACTTTCAACTTTCCTTTTGACATTGGAACTCTCTGATGTATCTTCTTCACCAGAAATTTTG
ACATCACCACCCTGTCATGTGACAAAAGACTAAAATCAGAAAAAGGCTTGTGCAAATTGCTCCA
TTGAGAACTAAAAATCTGGGATCTAATGCAAATAGTGGGCAAAAAAAAAGCCATTTCAACCATG
GAGATTCTTAAGCTACTTAAGAGGATCGATCATTTAGTGTAAGTGTAGCAGATAAAAACGCGAA
ATTCATGAAATGAGATGATCACGTCATTTCCTTTATATATGGTTCAATGTCTGCAATACTGATG
AGAAAGATATATAGATGAATAGAGAGAGACGCACGAAGAGATCCTTATTGACGAAGAGATGCTC
AGATACTCGAAGACCTTCTTCCATTTTCACATTTAGTTGAGGAATTGAACGACCCAACTCGGTT
CCAAGCAACGGTGGTGACTGTTTCTGCCCAAAATTTATCGAAGAGAAGAGCTGAGACTGCAATC
AGCTGAGTGAAGTTGGGTTGATGAAGATGAACACACACAAAAAAACACAATTGGGTCGCTTAAC
CGTGTTGGACCAAAAATAACACTCGAATCCTGGTTTAAGTCCTAAACAAAACCGAAAATAACAT
AATGAATGATTTTACCATTTGAAACTCTAGAATTGGTAAAGAATCGAAAGATGATCAGAAGTTA
TTAGTTGAATCTGATAGAGAAGAAGCTGAATTGAGTAGAAGTTTATAGAGGACAAGCTGGTTAT
CACCATTGAGACTCTGAATTGGTAAGAGAAGCACAAGTTATTGAGTAGAAGATGAATTTTACAA
TATAGATAGCCTTTTTTGGTAAGGTATGTATCACAACACTTTATTTATAGAGTTTGGTTACAAT
GTATGGAAATGTAAAATTGAAGTTTTCACTTGGGGAACTCTACATTATTTATTCTTCAAGGCAT
TAACCATGATACTTGGGTTTCCGTGGGAATGATACTCTACTCTCGAAGACGCACCATTATTCCC
CAACACACTGATCTAGCTGACAGAAAGTTAAGACCACTTCAATGTCATGATGCACCACCACAAC
CGTAGAAACTTCAGCCGGTTTTAAGCGGCTTTCCAAGCAGACAATGGTGGTGTCTCAGCGTTCT
TGAAAGTTGGTATCATGTTACTGTATCTATCTCCTTTCACAAAACCTGGTTGGGCAATGGCCTC
AAGCTCAGTCATCTCTTCAGGAGTGAGTTTCACTGACAAAGCTCCAATGTTCTGTTTGAGGTTC
TCGATCTTAGTGGTTCCTGGGATAGGGCAAACGTCATCTCCCTGGTGATGAACCCATGCCAGGG
CTAGTTGTCCAGGAGTGCACCCTTTCTTCTCCGATATTGCACAAACTTTTTCATAAACAATCTT
GTTGTGGTCTAAGTTTTCCTCTTGGAATCTTGGTAGAGCCTGCAATAAGTGGGTTTATATAAAG
CCATTTGATTAATCCACAGCTTATCTAAGGCTCATCAGCAAACAAGTCAAACAAAGCCAATGTA
CTTGCCTTTCTGAAGTCATCCTTTTCTAGGTTCTCAACAAGCTTGGGTCCAGATGCGAAGAAAC
CTCGTCCTAGAGGACTGTAAGCAACAATCCCAATCCCAAGTTCCCTGAAGAAGGAAAGAGAATT
TGAAGTTACATGATCGACAGATATTGCACCAAGAAAATCGGATGACATCTGAATACATACCTGC
AGGTCGGAATGATTTCTTCTTCCACATCTCTCGTCCACAAGGACCATTCTATCTGCACGGCAGT
AATTGGGTGAACAGCATGTGCTCTTCTGATAGTTGAGGCAGAGGCTTCAGACAAACCAATGTAC
TTTATTTTACCCTCTTCAACCAGCTTCTTCAGTTCTCCCAT
Conservation Information
Conserved circRNAs sly_circ_000850
PMCS 0.657460296
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017