Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G19100_circ_g.3 |
ID in PlantcircBase | ath_circ_003380 |
Alias | Ath_circ_FC0426 |
Organism | Arabidpsis thaliana |
Position | chr1: 6597340-6598196 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT1G19100 |
Parent gene annotation |
Protein MICRORCHIDIA 6 |
Parent gene strand | + |
Alternative splicing | AT1G19100_circ_g.2 AT1G19100_circ_g.4 AT1G19100_circ_g.5 AT1G19100_circ_g.6 AT1G19100_circ_g.7 AT1G19100_circ_g.8 AT1G19100_circ_g.9 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G19100.1:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.140029161 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6597960-6598193(+) |
Potential amino acid sequence |
MWLNSDAKLELDFDSVAEDILIEGSIKKTGSKIVNDHIASRFSYSLRLDYEFNASAGEFKTLQD REHFISSLSILLEWSPFSTEAELLQQFDDVGPHGTKVIIYNMWLNSDAKLELDFDSVAEDILIE GSIKKTGSKIVNDHIASRFSYSLRLDYEFNASAGEFKTLQDREHFISSLSILLEWSPFSTEAEL LQQFDDVGPHGTKVIIYNMWLNSDAKLELDFDSVAEDILIEGSIKKTGSKIVNDHIASRFSYSL RLDYEFNASAGEFKTLQDREHFISSLSILLEWSPFSTEAELLQQFDDVGPHGTKVIIYNMWLNS DAKLELDFDSVAEDILIEGSIKKTGSKIVNDHIASRFSYSLR(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017;Chen et al., 2017a |