Plant Circular RNA Database

Detail information of AT1G19100_circ_g.8

			
						 General Information
					
						CircRNA Name
						AT1G19100_circ_g.8
					
						ID in PlantcircBase
						ath_circ_003385
					
						Alias
						1:6598527-6601217
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 6598527-6601217  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT1G19100						
					
						Parent gene annotation
						
							Protein MICRORCHIDIA 6
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT1G19100_circ_g.2 AT1G19100_circ_g.3 AT1G19100_circ_g.4 AT1G19100_circ_g.5 AT1G19100_circ_g.6 AT1G19100_circ_g.7 AT1G19100_circ_g.9 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT1G19100.1:9

General Information
CircRNA Name	AT1G19100_circ_g.8
ID in PlantcircBase	ath_circ_003385
Alias	1:6598527-6601217
Organism	Arabidpsis thaliana
Position	chr1: 6598527-6601217 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT1G19100
Parent gene annotation	Protein MICRORCHIDIA 6
Parent gene strand	+
Alternative splicing	AT1G19100_circ_g.2 AT1G19100_circ_g.3 AT1G19100_circ_g.4 AT1G19100_circ_g.5 AT1G19100_circ_g.6 AT1G19100_circ_g.7 AT1G19100_circ_g.9
Support reads	2
Tissues	root
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT1G19100.1:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GATTTGGTGAAAGACGAGCACAGAAGAAATGTAAATACGTAGAAACTTCCTCTGCACTTAAAAA
AACACTCTTTTTTGGCTGGTCGTATCCATCTTCTAGgttgtcgaacatcataacgttgctgatg
atctcatgcatccgcagtacatcttgtataagcctcaggctgctggatctgaagaggtgcgtaa
agtatctg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTTGTCGAACATCATAACGTTGCTGATGATCTCATGCATCCGCAGTACATCTTGTATAAGCCTC
AGGCTGCTGGATCTGAAGAGGTGCGTAAAGTATCTGTAGGCTTTTGTTTTTCTTCGTTTAAAAC
TTCTTAGTTTTTTTCCTTTCTTATGATTTGAATCTCGGTATTCAATGAGCAGGCTTTAGTTGTA
ACGACGATTGGATTTCTGAAAGAAGCTCCCAAAGTAAATCTTCACGGGTTCTGCGTTTATCACA
AAAACCGCCTTATTATGGTGAGTTTTGAAATATTAAATATGTTATAGTTCACATTTAGTGGAAA
AAGGATTCTCACAGACTGGGATATTAGTTATAATTTTGTTGTTGGACCTCTCTACACTGAACCT
GGCATGCAGATTTATAGGTATTTTGAAAAAAAATCTTCTTAACTCGAAATTTGCCTCAGAAATT
TTCTTACCCCAGTTAAAGACTACACAACTCAGTATCATGTCATGTTTCTATCACAAATTCTACA
CACACAATCTTGTATGTTACTGTGACCTTATCTCATTTGCTTTGCTCTTTTCAGCCATTTTGGC
AGGTCATAAATTATTCAAGCAGTCGAGGAAGAGGGGTTGTTGGTAAGAAACTGCAAAATGGATC
AATCAATATCACAAGACATGTCCACTGATTTGTTTTTTTTGTAGCACACTTCTTTGATGGGTGA
ATTTATGGTAAGTTGTATATGTTTCCAGGTGTTCTAGAAGCTAATTTTGTTGAGCCAACCCATA
ACAAGCAGGATTTTGAGAAAACTGTTCTTCTTCAGAAGCTTGAAAACCGTTTAAAGGAAATGAC
GGTGGAGTATTGGTAATTTCCTAAGCCTCATCTTTTTGGTAGCTGTTGTGTTCCTACTTTTATA
TATTCCTTCGCCAAAGTATATAATACAGAGTTTTCCTAGTGTATGGTAAAAGACCATATAAGAT
ATATTGTTCTCTTGCTGAGCATGGGGAGTTCTGTCTTTTGATTTGCCTCTAAAAGTTTCCCTAT
TACCTCTGGATTGGCTTGTATCAATTCCCAGCGTTTCTTACTGCTTAATGTGATTAAAAATCTT
TAATAGGAGCTGCCATTGTGTGTTGATTGGGTATCAAGTAAATAAGAAGCCTCGTCTTCAGATA
CCTCAAAAAGTTCAACCTGCCGGTAGACAAGCATTAAGTCCTCCTCCAGGCTTCCAAGCAGTTT
TTCCACAAGGAAATACAACATCTCTCCCTAGAGTTTCAACTCAGCCAGGTAAATGTAACTAAAA
CTTGAACCGTTATGTAAGTGGGATCATAGTTAGTCTTTGACTTGAACAAAACTAGAGTTCTAAT
ATTGGACTGCCCGGTCTGACCTGGATTGGTCCAGGACTATGCCCAAATTAAGAAACATGAAAAT
GATAGTGCTGTGAATGCTCTATATAGTGACTGCAACTTGCCGCTTTTTCAACTCACTTACTTAA
GAAAATAGAACAAAATAATCAATATCATCTTACTGTAAAGCTGACACACTTTTCCAAACTGATT
GCAAGTGCTTCTGCTATCATTTTGTTGGACGTCGTTTTGTACTGTATATTTCCCCGAACTCTCT
CTGATGCTGACTTATGATGGTTTCATTATTATTGCAGTGCTGTTGGAGAAGAGGAAAGAACATC
CTGATTCTGTTGCAAGTGCAGCGTTAAAAAGAAAGGTTGGGAATGATGACTTTACTGTCCCGGG
GCATATTCGGGTTGAACAGGTACCTCAATATATGTTTCTTCTCTTTGATTTTCTGTGCAACATG
TTTAACCCCAATACCTAGAGATGCTGACAAAACTGTGGATATTACTGACTAGAGTTTCATCTAA
GCGCTGTTTGTGATAAAATATGACATTTCTCTTATGTGATAGCCCATGCACATGTGCCCACATA
GAAAACATGATAGTAACTTTAGTTTGTGACTGCATCTACCCATTCCGTTTCTCTAACTTCATTG
TCTTTTGCACTCTGAAGTTTATTCATGGATCAGCAAGTCAGTCACAAGATATTGAAACTGTCAA
GTTGATGGAAGAAAACAAGAAGCTCCGAGCAAAGTAAGATAAATTATGTAATATATATTGCCAA
TTTCCGCATTTGTTTGTGATTTCTGCCAGAAATTTATTGTATTTCTTATACTCAGATGTTTGGA
CCGCAAGGTGCGAAGTCAGAACCTTGAAGTCAAGGTATATCCGTCGTACATTAACAACCCTTAT
TTAGTACTTGTATCTTTCATTTGCTTAGGTGGTTTTGACTTACCATTGTTCCTGCCTAATCCCA
ATCTCCTCTAAAGAAATCAGATATATGGAGCTAGTTTAGCAACTAGCTTATTGGCAATTTCCAT
CAATCACTTTAGTAGAAATACTAAATATCACCATAGGTTCCTCCATATACCGTTGAATGAAATA
CAACGATGAGTTTAAGTCATATGATTGCAGAAACGATCTTGATTTTGTGGTGATACAATTTGGG
TGTTTTTTTTGTCTGCGCAGGCCATGAATCTTAGGAGTGAGCTCGAGAACTATAAAAGTGAGTA
TGAAAGGTTAATGGTAGAGCTACAAGCTTTGGATTTGGTGAAAGACGAGCACAGAAGAAATGTA
AATACGTAGAAACTTCCTCTGCACTTAAAAAAACACTCTTTTTTGGCTGGTCGTATCCATCTTC
TAG
						
					

			
		

Sequences
Splice junction sequence	GATTTGGTGAAAGACGAGCACAGAAGAAATGTAAATACGTAGAAACTTCCTCTGCACTTAAAAA AACACTCTTTTTTGGCTGGTCGTATCCATCTTCTAGgttgtcgaacatcataacgttgctgatg atctcatgcatccgcagtacatcttgtataagcctcaggctgctggatctgaagaggtgcgtaa agtatctg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTTGTCGAACATCATAACGTTGCTGATGATCTCATGCATCCGCAGTACATCTTGTATAAGCCTC AGGCTGCTGGATCTGAAGAGGTGCGTAAAGTATCTGTAGGCTTTTGTTTTTCTTCGTTTAAAAC TTCTTAGTTTTTTTCCTTTCTTATGATTTGAATCTCGGTATTCAATGAGCAGGCTTTAGTTGTA ACGACGATTGGATTTCTGAAAGAAGCTCCCAAAGTAAATCTTCACGGGTTCTGCGTTTATCACA AAAACCGCCTTATTATGGTGAGTTTTGAAATATTAAATATGTTATAGTTCACATTTAGTGGAAA AAGGATTCTCACAGACTGGGATATTAGTTATAATTTTGTTGTTGGACCTCTCTACACTGAACCT GGCATGCAGATTTATAGGTATTTTGAAAAAAAATCTTCTTAACTCGAAATTTGCCTCAGAAATT TTCTTACCCCAGTTAAAGACTACACAACTCAGTATCATGTCATGTTTCTATCACAAATTCTACA CACACAATCTTGTATGTTACTGTGACCTTATCTCATTTGCTTTGCTCTTTTCAGCCATTTTGGC AGGTCATAAATTATTCAAGCAGTCGAGGAAGAGGGGTTGTTGGTAAGAAACTGCAAAATGGATC AATCAATATCACAAGACATGTCCACTGATTTGTTTTTTTTGTAGCACACTTCTTTGATGGGTGA ATTTATGGTAAGTTGTATATGTTTCCAGGTGTTCTAGAAGCTAATTTTGTTGAGCCAACCCATA ACAAGCAGGATTTTGAGAAAACTGTTCTTCTTCAGAAGCTTGAAAACCGTTTAAAGGAAATGAC GGTGGAGTATTGGTAATTTCCTAAGCCTCATCTTTTTGGTAGCTGTTGTGTTCCTACTTTTATA TATTCCTTCGCCAAAGTATATAATACAGAGTTTTCCTAGTGTATGGTAAAAGACCATATAAGAT ATATTGTTCTCTTGCTGAGCATGGGGAGTTCTGTCTTTTGATTTGCCTCTAAAAGTTTCCCTAT TACCTCTGGATTGGCTTGTATCAATTCCCAGCGTTTCTTACTGCTTAATGTGATTAAAAATCTT TAATAGGAGCTGCCATTGTGTGTTGATTGGGTATCAAGTAAATAAGAAGCCTCGTCTTCAGATA CCTCAAAAAGTTCAACCTGCCGGTAGACAAGCATTAAGTCCTCCTCCAGGCTTCCAAGCAGTTT TTCCACAAGGAAATACAACATCTCTCCCTAGAGTTTCAACTCAGCCAGGTAAATGTAACTAAAA CTTGAACCGTTATGTAAGTGGGATCATAGTTAGTCTTTGACTTGAACAAAACTAGAGTTCTAAT ATTGGACTGCCCGGTCTGACCTGGATTGGTCCAGGACTATGCCCAAATTAAGAAACATGAAAAT GATAGTGCTGTGAATGCTCTATATAGTGACTGCAACTTGCCGCTTTTTCAACTCACTTACTTAA GAAAATAGAACAAAATAATCAATATCATCTTACTGTAAAGCTGACACACTTTTCCAAACTGATT GCAAGTGCTTCTGCTATCATTTTGTTGGACGTCGTTTTGTACTGTATATTTCCCCGAACTCTCT CTGATGCTGACTTATGATGGTTTCATTATTATTGCAGTGCTGTTGGAGAAGAGGAAAGAACATC CTGATTCTGTTGCAAGTGCAGCGTTAAAAAGAAAGGTTGGGAATGATGACTTTACTGTCCCGGG GCATATTCGGGTTGAACAGGTACCTCAATATATGTTTCTTCTCTTTGATTTTCTGTGCAACATG TTTAACCCCAATACCTAGAGATGCTGACAAAACTGTGGATATTACTGACTAGAGTTTCATCTAA GCGCTGTTTGTGATAAAATATGACATTTCTCTTATGTGATAGCCCATGCACATGTGCCCACATA GAAAACATGATAGTAACTTTAGTTTGTGACTGCATCTACCCATTCCGTTTCTCTAACTTCATTG TCTTTTGCACTCTGAAGTTTATTCATGGATCAGCAAGTCAGTCACAAGATATTGAAACTGTCAA GTTGATGGAAGAAAACAAGAAGCTCCGAGCAAAGTAAGATAAATTATGTAATATATATTGCCAA TTTCCGCATTTGTTTGTGATTTCTGCCAGAAATTTATTGTATTTCTTATACTCAGATGTTTGGA CCGCAAGGTGCGAAGTCAGAACCTTGAAGTCAAGGTATATCCGTCGTACATTAACAACCCTTAT TTAGTACTTGTATCTTTCATTTGCTTAGGTGGTTTTGACTTACCATTGTTCCTGCCTAATCCCA ATCTCCTCTAAAGAAATCAGATATATGGAGCTAGTTTAGCAACTAGCTTATTGGCAATTTCCAT CAATCACTTTAGTAGAAATACTAAATATCACCATAGGTTCCTCCATATACCGTTGAATGAAATA CAACGATGAGTTTAAGTCATATGATTGCAGAAACGATCTTGATTTTGTGGTGATACAATTTGGG TGTTTTTTTTGTCTGCGCAGGCCATGAATCTTAGGAGTGAGCTCGAGAACTATAAAAGTGAGTA TGAAAGGTTAATGGTAGAGCTACAAGCTTTGGATTTGGTGAAAGACGAGCACAGAAGAAATGTA AATACGTAGAAACTTCCTCTGCACTTAAAAAAACACTCTTTTTTGGCTGGTCGTATCCATCTTC TAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.108086051

Conservation Information
Conserved circRNAs	NA
PMCS	0.108086051

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT1G19100_circ_g.8

Address

Any questions?

Supported by