Detail information of Os03g0704200_circ_g.3


General Information
CircRNA Name Os03g0704200_circ_g.3
ID in PlantcircBase osa_circ_021159
Alias Os_ciR1098
Organism Oryza sativa
Position chr3: 28309584-28311027  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method find_circ
Parent gene Os03g0704200
Parent gene annotation Zinc finger, MYND-type domain containing protein. (Os03t0704200-
01)
Parent gene strand -
Alternative splicing Os03g0704200_circ_g.1 Os03g0704200_circ_g.2
Support reads 15
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os03t0704200-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCTTATGACTTTGAGTAGCATTACCTTGGAAAAGGTATGTGTAATTTCCTTAAGATCAAGCTC
GAATGAAGGAAGAATCAGTTGGACAAGATTGGCCATtttgtcagataatagtagtacatcgcta
gccatcttttgtaactcttccccatctctagaagtgctacatttctggcatgtataacctttgt
ttcctaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTGTCAGATAATAGTAGTACATCGCTAGCCATCTTTTGTAACTCTTCCCCATCTCTAGAAGTG
CTACATTTCTGGCATGTATAACCTTTGTTTCCTACAGATGTTAAATCCAGATAAAAATGTAAGA
TCAATGATAACTGAAACAGTATTAAAGCTGCAGCTGACATTATGTTTGAATAATCCAATCTATT
ACATCTCTTCAGTTAGTATTTTTCCTTCGTGATGTTAACCAACCTGCATTAGGCAGAAGAAATC
CATCACACTTTTGGTCATTGCATCTGTATCCCTCAAGGAGCGCATCTTCCTCAGAATCCTGTAA
GGTTGGGGAAAAAATTATAGCTAGAGAACACTTCATTATCAAGAATGTGTCAGCTTCCCATAGG
ACATCCAAGAATAGTAAGCAATGAAATCAAAAACCTTAACACAACGGGGACATGTGCAAGTGAA
GTAGTAGTGCTTGAGATCGTCCTGTCTCTTCATAGTGGTTGCCGCAGTTTCAATGTAACTTATT
GATACCTAACCAAAGATGCGTAACTGACATTGCCCAGAGAAGAAACCCCAAGAAACATGGATTG
CAAGCAGAGGAATATATGATAATAAGGAAAAAAACAAAAGTATATTCATTACCTCCTCATTTTT
ACTTATAGGTTGCAATGCACGAACATATGCTGTCCGACCTTCAAATATCAAAACTGCATTTGGT
ACACAACTAAGTATACCAGGAAAGGGTAGATGCAATAATAATTATTTATTAAATGATAAAATCG
GAGGAAGATGCTAAACGATGAATAAAGGAATAGTATATCACCTGTGGTTAATAATAGATAAAAC
AGGGTATAGTCCAGTCCCAAGGGGCCTCAGTTCAGGATCACATATGGTATGAGCGTTGCAGGCA
AACTGCACATATGAGGCAGAGGATATATTATTCATGCTTACTTCTAAAGGTCTAGCCAGATAAT
CACCAAAATAGTCCTAGCCACTGCTTAAGGGTGAGACTGGAAGACAACAAATATGAAAAACGGA
AGAATAAACATGGACAGAACAATTATTCTTTTTTTTTCCAAAGCTTCTTGGCTTATTCTGGTTT
ATTTTTCAAAAGGCAGATTCAAGACACGATTCTACTATACTCAAATAAGAGTATAAGACCACAG
GGAGGTGTCCTAGATAACTTGGATCCTCATGGTTTTGGAACAAAATTAATCACATCCAACTAGG
TCCCAATAGGTTTTAGATGGAAGGTACAAGCAAAATCTCAAAAATAACACCAGGAAACAACTGT
ATTTTTTAAGCTCAATTATTCATTGGATACATTGTCTTCTATAGTAGTTAAAACATTTTTTATA
ACCTTATGACTTTGAGTAGCATTACCTTGGAAAAGGTATGTGTAATTTCCTTAAGATCAAGCTC
GAATGAAGGAAGAATCAGTTGGACAAGATTGGCCAT
Conservation Information
Conserved circRNAs osi_circ_013480 osi_circ_013481 osi_circ_013478
PMCS 0.332114497
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015