Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA018554_circ_g.2 |
ID in PlantcircBase | osi_circ_006041 |
Alias | 5:7925844|7927192 |
Organism | Oryza sativa ssp. indica |
Position | chr5: 7925844-7927192 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA018554 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA018554_circ_g.1 BGIOSGA018554_circ_g.3 BGIOSGA018554_circ_g.4 BGIOSGA018554_circ_g.5 BGIOSGA018554_circ_g.6 BGIOSGA018554_circ_g.7 BGIOSGA018554_circ_g.8 BGIOSGA018554_circ_g.9 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA018554-TA:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
7927167-7927155(-) 7927115-7926188(+) |
Potential amino acid sequence |
MLYVKGPQTEFQRYIRSFNVEVHGPRAHVTKDSKSSKLYDHRPLVLDNDNYQRILQIPKRKGAN FRDLSGVIVGPDNVARLDPTKERVLLPSGRPLVLDCILAYENGKSLRPFGRVWWDEVVGTVLTV PNARMQALIHPAQDRLLTIRESARLQGFPDNYRFRGTVKDRWQMGKAVMKCCM*(-) MTECIFGIQFEDPLHTAFHHGFPHLPPVFDCSTKPVIVRKALQPSTFTNSKQSVLCRMYQGLHT GIWNCQHGSHYLIPPYSTKRS*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |