Detail information of BGIOSGA018554_circ_g.8


General Information
CircRNA Name BGIOSGA018554_circ_g.8
ID in PlantcircBase osi_circ_006045
Alias 5:7928016|7928486
Organism Oryza sativa ssp. indica
Position chr5: 7928016-7928486  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA018554
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA018554_circ_g.1 BGIOSGA018554_circ_g.2 BGIOSGA018554_circ_g.3 BGIOSGA018554_circ_g.4 BGIOSGA018554_circ_g.5 BGIOSGA018554_circ_g.6 BGIOSGA018554_circ_g.7 BGIOSGA018554_circ_g.9
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA018554-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTTTTCTCACATTTAAATGGTGCCTCGAATTCTCTATTGCGGTTGTAGCCACTAATTCCTTG
GCATGGTGGACCCCCACATACAACGTCCACATCACCctcaaaagccaacgggcagccattcttc
acaatcgcctcatgcgtaggcagtggaaaagggggtaatttctatagtgtgaaaaatagtataa
tgaggggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAAAAGCCAACGGGCAGCCATTCTTCACAATCGCCTCATGCGTAGGCAGTGGAAAAGGGGGT
AATTTCTATAGTGTGAAAAATAGTATAATGAGGGGCCAAGAACACAAATATGCCTATACAAGAT
AATGATTACTTACCTCCTTAGAATGACAGCCTAATAAAAATACACGCATCCGAAATTGTGGAAG
GCCATAACATCCAGCAGCCATGATCCCTAGCCTTGCTTGATAATGCATTGCAACTAGCCGACTT
AAAGCATATCTTGCAAGTGTTGCATCAGCAAATTTCAATATATCAAGGACGTTTTCCATGTACA
CATATTTGGGCTTCAAAAATTGCACAACATCCATAAAAACTATGATCTGCTTGTTTTTCTCACA
TTTAAATGGTGCCTCGAATTCTCTATTGCGGTTGTAGCCACTAATTCCTTGGCATGGTGGACCC
CCACATACAACGTCCACATCACC
Conservation Information
Conserved circRNAs osa_circ_027029*
PMCS
Functional Information
Coding potential Y
Potential coding position 7928371-7928018(-)
7928040-7928377(-)
7928454-7928059(+)
Potential amino acid sequence MDVVQFLKPKYVYMENVLDILKFADATLARYALSRLVAMHYQARLGIMAAGCYGLPQFRMRVFL
LGCHSKEKLPPFPLPTHEAIVKNGCPLAFEGDVDVVCGGPPCQGISGYNRNREFEAPFKCEKNK
QIIVFMDVVQFLKPKYVYMENVLDILKFADATLARYALSRLVAMHYQARLGIMAAGCYGLPQFR
MRVFLLGCHSKEKLPPFPLPTHEAIVKNGCPLAFEGDVDVVCGGPPCQGISGYNRNREFEAPFK
CEKNKQIIVFMDVVQFLKPKYVYMENVLDILKFADATLARYALSRLVAMHYQARLGIMAAGCYG
LPQFRMRVFLLGCHSKEKLPPFPLPTHEAIVKNGCPLAFEGDVDVVCGGPPCQGISGYNRNREF
EAPFKCEKNKQIIVFMDVVQFLKPKYVYMENVLDILKFADATLARYALSRLVAMHYQARLGIMA
AGCYGLPQFRMRVFLLGCHSKEKLPPFPLPTHEAIVKNGCPLAFE(-)
MAARWLLRVMWTLYVGVHHAKELVATTAIENSRHHLNVRKTSRS*(-)
MVDPHIQRPHHPQKPTGSHSSQSPHA*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021