Detail information of Os05g0592500_circ_g.9


General Information
CircRNA Name Os05g0592500_circ_g.9
ID in PlantcircBase osa_circ_029181
Alias NA
Organism Oryza sativa
Position chr5: 29524204-29525874  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os05g0592500
Parent gene annotation SIT4 phosphatase-associated protein family protein. (Os05t059250
0-01)
Parent gene strand +
Alternative splicing Os05g0592500_circ_g.3 Os05g0592500_circ_g.4 Os05g0592500_circ_g.5 Os05g0592500_circ_g.6 Os05g0592500_circ_g.7 Os05g0592500_circ_g.8 Os05g0592500_circ_g.10
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os05t0592500-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTACCTTCACTGATATAGTCCTCTCTAGCATTATGGAACATGTTAGTAATGTGTCAATGTTTGC
TTATTGCAGGCACAAGTAATTGAACGAGATGATGAGgtgatttgctgaagttgttggatatttc
ttctgctgaaaatgttttacctacaacatatggatgtttgcagccccctcttggaaaacaccgc
ttgaaggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGATTTGCTGAAGTTGTTGGATATTTCTTCTGCTGAAAATGTTTTACCTACAACATATGGATG
TTTGCAGCCCCCTCTTGGAAAACACCGCTTGAAGGTATGGCTTCATGTAGTGAGTTTTTGTAAT
TGATAGTTTGTGTGCATGTTTCTTTATATTTTGCTCAAGCTAATCCTTCTTTGCTGAATACCCT
GGATCTTAAGCTTTTCTAATTATTTGACGTAAAGCAAAAATCTTGCTTATGGGTACCTTGACTT
ACTTTTATTAATCTTGCCTCGGGATTTCTGGCGAAGTAATTTCTGATATATGCATGCAATTGAG
TTCTGATGGTCTAAAACTATCGTGTCCCTTGCATAAGTCTCTTTTGTTAGTCTAGGCTTGCAAT
GTCCAATGAATCATTTCTGTTCTTTTGACATGTTCCTTCACAGTCCTTTCCTGTTCCATTTTGG
TTTTAATGCGCGGTATGTTTGTTCCTCCCAGATTGTGGAATTCATCTCTGTTTTGCTGACGATT
GGTAGTGAAACTGCGGAACAGGAGCTAATCAACCAATCTGCAGTAAAACGTTCCATTGATTTGT
TCTTCCAGTAAGTGGGGCTATTTTATGTGCTCTTCTTCCTAACAATTGCAAGAGAATCATCACA
TATTGGTTCGTGCTGCAGGTACCCTTACAATAACTTTCTGCACCATCATGTCGAGAGTATTATC
ATTTCTTGTCTGGAAGTTAATAGATCCCAGCTGATTGACCATGCCCTTAATGAATGCAATCTTG
TTGGCAAAATTCTTGCTGCTGAAAGAAGTTCCTCCCTGTCAACAGAATCTAACACAGTAATCTA
TTCCTGAATTCTTATGTCCTTCATACCCCTTGTTGCAAGACCAGATATACACAGGGTCCTGTAT
ATTGAGTATTCTTATCTTCTATGTGCAGCCAACATTACTATCTGAAGGGAAGGTGCCTCCAAAA
ATTGGGAATATTGGGCACATAACTCGAATAGCTAATAAGCTTATTCAACTGGGAAATAGCAACA
GCATAATCCAGTCTCATTTGCAGGTACTTTGAGTTTCTCTTCTTTCGTTAGCCTATCACTTTAG
CAATTGCATGATGTACTTCTTGTGCATAATATCATCTAAACTTTATTAATTAGCTAACTTGGTG
AATAATGTCTTTACAGGAGAACAGCGAGTGGGTTGAATGGCAGACAACTGCCCTGGTCAAACGC
AATGAGGTTGAGAACGTTTATCATTGGGCCTGTGGGTAGGTTATCACCATGTTTTGTGATGCTT
TTGTGATTGCGTACACTTGTCTTCGCTGACTTTTGGCTATCAATGCTTTGTGCTGCAGTCGTCC
GACTTCTCTACATGATCGTGGTAGGGATAGCGATGATGATGACTTCCGAGACAGGGACTATGAT
GTGGCGGCACTTGCTAATAACCTGAGCCAGGCATTCCGGTATGGAATGTACAGCAATGATGACA
TTGAAGAGGTGATTGTCTGAACTTGCAGCAGCCTGAGCTTTGGTAGCATGCTAGAATTTACATA
CCTGAGGAAATGGGCACTGATGTCTTATGCTCTTATTACCTTCACTGATATAGTCCTCTCTAGC
ATTATGGAACATGTTAGTAATGTGTCAATGTTTGCTTATTGCAGGCACAAGTAATTGAACGAGA
TGATGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.128929379
Functional Information
Coding potential Y
Potential coding position 29525658-29524212(+)
29524773-29525627(-)
Potential amino acid sequence MYSNDDIEEAQVIERDDEVIC*(+)
MERFTADWLISSCSAVSLPIVSKTEMNSTIFKRCFPRGGCKHPYVVGKTFSAEEISNNFSKSPH
HLVQLLVPLQCHHCCTFHTGMPGSGY*(-)
Sponge-miRNAs osa-miR5152-5p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017