Detail information of Os03g0254800_circ_g.4


General Information
CircRNA Name Os03g0254800_circ_g.4
ID in PlantcircBase osa_circ_018914
Alias Os_ciR1873
Organism Oryza sativa
Position chr3: 8178732-8181019  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os03g0254800
Parent gene annotation Similar to Chorismate synthase 1, chloroplast precursor (EC 4.2.
3.5) (5- enolpyruvylshikimate-3-phosphate phospholyase 1). (Os03
t0254800-01)
Parent gene strand -
Alternative splicing Os03g0254800_circ_g.1 Os03g0254800_circ_g.2 Os03g0254800_circ_g.3 Os03g0254800_circ_g.5 Os03g0254800_circ_g.6 Os03g0254800_circ_g.7 Os03g0254800_circ_g.8 Os03g0254800_circ_g.9 Os03g0254800_circ_g.10 Os03g0254800_circ_g.11 Os03g0254800_circ_g.12
Support reads 6/1
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0254800-01:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGCATCCACTGATTACGCAACCAACACCGCCTCCATGAGACTCTCCATAAGTTGCAACCTGGA
AGTAGTTCCCAAATACATTTGCAGACGCCTTCACCTcccaatagtcgcggttggcttgaaagct
actttgaagtatataatttcaccatttgatatccctccctgcatggacatacacattataaata
ctaagaca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 941
Transcript exons: 8178732-8178797,8178938-8179032,8179141-8179243,8179457-
8179588,8179677-8179757,8179959-8180051,8180208-8180291,
8180472-8180530,8180635-8180711,8180869-8181019
CCCAATAGTCGCGGTTGGCTTGAAAGCTACTTTGAAGTATATAATTTCACCATTTGATATCCCT
CCCTGCACACCGCCTGAACGATTAGTTCTTGTTCTCACATTTCCAGCCTCATCCATATAGAACT
CATCATTATGCTCACTTCCAGTGTAGTCAGTACCTGCAAATCCACTGCCGATCTCAAACCCCTT
GCTTGCAGGAAGAGAAAGCATAGCTTTCGCCAATTCAGCCTCAAGTTTGTCAAATACAGGAGAG
CCAATCCCACGAGGAACATTTCTTGCAATGCATGTGACCACACCACCAATCGAATCACCTCTAA
CTCGTACTTTATCGATTGCATCAATCATCTTCTGTGCATATTCTGGATCAGGACATCTAACAAT
GTTGCTTTCTATCTGTTCCATTGTTACAGTGTCATAATCAACGGCATCTTCTGGTAGTACAACT
TGATGCACCTTGGACACAAACGCCAAGATCTCTACTCCAGATTTGAGCTTAAGAATTTTCTTTG
CAAGAGCTCCTGCAGCCACCCTTCCAATGGTCTCTCTTGCTGATGATCTTCCACCTCCCTGCAC
TGCTCTAACACCGTATTTGAAGTCATAAGTTGCATCTGCATGTGAAGGTCTGTAGGCCTTAGCC
ATTTCACTGTAATCACCCCCTCTCTGATCTGTGTTCGGGACAAAAACATGAATTGGTGTCCCAG
TGGTCATTCCTTCATGTGTCCCTGAAAGAATTTTGCAAGTGTCAGTCTCCTTTCTTGGGGTGGT
TATTCTGCTCTGGCCTGGCCGTCTCCGGTCGAGTTCTACTTGCATATCTGCTTCAGTAAGTGGG
ATTCTGGGTGGGCATCCACTGATTACGCAACCAACACCGCCTCCATGAGACTCTCCATAAGTTG
CAACCTGGAAGTAGTTCCCAAATACATTTGCAGACGCCTTCACCT

Genomic sequence CCCAATAGTCGCGGTTGGCTTGAAAGCTACTTTGAAGTATATAATTTCACCATTTGATATCCCT
CCCTGCATGGACATACACATTATAAATACTAAGACAACGGTGTTATACTATTTACTAGTATTTT
TTTAATCTAGAATGCAGCTAGATGTAGCGAAAACAATAAATAATATAACTGTAAAACAACAGGG
GACTAGGATAAAACCTGCACACCGCCTGAACGATTAGTTCTTGTTCTCACATTTCCAGCCTCAT
CCATATAGAACTCATCATTATGCTCACTTCCAGTGTAGTCAGTACCTGGGCACAAGTTATTAGT
TAGTATTGAGGCCAGTAGCAAAGTAGTTGGCATGCACAGCTATTTGCAAAAAATAAATCAACTA
ATTATGTGCAGATTAATTCAATTACCTGCAAATCCACTGCCGATCTCAAACCCCTTGCTTGCAG
GAAGAGAAAGCATAGCTTTCGCCAATTCAGCCTCAAGTTTGTCAAATACAGGAGAGCCAATCCC
CTACAAATTGTCGTTGCTCTATCATATCAGTAGCTCAACAGAGAAAAAATATTTTTCTAATGAA
TGATCAAGCTTCAATGTTCAAACAGATTTTGTGCAAATTCCAAAGCAGGGCGGTCATAAGCAGA
GAGTGCAAACGATGAGCTTATTTAGTTTATTTTAGCTGGAGGACATATATCAAAATAAACATAA
CTGCAGGGTTTAAATACTTACACGAGGAACATTTCTTGCAATGCATGTGACCACACCACCAATC
GAATCACCTCTAACTCGTACTTTATCGATTGCATCAATCATCTTCTGTGCATATTCTGGATCAG
GACATCTAACAATGTTGCTTTCTATCTGGAAAATAAAATAAATATAATATTCAGCAAATGCCTT
CAGAGACTGTCCAGAAGTGTTAAACTTGAAAATGGTGGGAACCACAGACCTGTTCCATTGTTAC
AGTGTCATAATCAACGGCATCTTCTGGTAGTACAACTTGATGCACCTTGGACACAAACGCCAAG
ATCTGCAATTGAAAATATTTTGCTGCTATGAGACATTGGACAGAATTTGTTGCATGGCTTCAGC
ATATTTAGGATGTATATTCGAATGCTGATTCATTTTTCTTCAGCGTCCAATTGTTCATGGATAA
GTAAACATGTCAATTGCGATGCTTGATACAAATCTTGATCAGTTAAGAGTAAAAGGTTGCCAAG
TAGGATCACACCTCTACTCCAGATTTGAGCTTAAGAATTTTCTTTGCAAGAGCTCCTGCAGCCA
CCCTTCCAATGGTCTCTCTTGCTGATGATCTTCCACCTCCCTATCATTCGGTTGATAGAAGATG
TTGGTTAGGCATTCAAGTAAGAGAAGTTTAGGTACCACAGTTTTAGACATTCAAATAAGAGAAG
TTTAGGTACTACAGTTGATGGTTCAATGAATGGCTATATTACACATTATAAAACATGAAAAAAA
GTACCTGCACTGCTCTAACACCGTATTTGAAGTCATAAGTTGCATCTGCATGTGAAGGTCTGTA
GGCCTTAGCCATTTCACTGTAATCCTGTGGGAATGAATATGGTTATTTCCAGCTTTAATATGTT
ACTCCCTCTGTCCCAAAATATAAGCATTTTTAGCTATGAATCTGGGCAATTGTGTGTCCAGATT
CGTAGCCAAAAGTTGTTATATTTTGGGACGGAGGTAGTATTTCAATACATTAATGCGAAAAAAC
TTAGGTACTTACACCCCCTCTCTGATCTGTGTTCGGGACAAAAACATGAATTGGTGTCCCAGTG
GTCATTCCTGCAGAAAACCCATCAATGCTATCGTGAATATGAGACAAGCTAATACTCTAAATTC
AAAAATATTTTTTCCAAGTTTATCCCATGTCCTGAAAGACACCATACCTTCATGTGTCCCTGAA
AGAATTTTGCAAGTGTCAGTCTCCTTTCTTGGGGTGGTTATTCTGCTCTGGCCTGGCCGTCTGT
GATAATCAAAATTTTATGTCAGTTAACATTATGGTGTAATGTAACATAACAATCATATTCTGCA
AGAGGTTAGCAGGATTGCATTTGCATAATCCTGTTTTTGACAGAAGCCAGCTGTCAGCACAGAA
ATAATGGATTTTTCAAGAGACAAACCTCCGGTCGAGTTCTACTTGCATATCTGCTTCAGTAAGT
GGGATTCTGGGTGGGCATCCACTGATTACGCAACCAACACCGCCTCCATGAGACTCTCCATAAG
TTGCAACCTGGAAGTAGTTCCCAAATACATTTGCAGACGCCTTCACCT
Conservation Information
Conserved circRNAs osi_circ_014145
PMCS 0.340464033
Functional Information
Coding potential Y
Potential coding position 8180956-8178992(+)
8180893-8181016(-)
Potential amino acid sequence MRLSISCNLEVVPKYICRRLHLPIVAVGLKATLKYIISPFDIPPCTPPERLVLVLTFPASSI*(
+)
MQVELDRRRPGQSRITTPRKETDTCKILSGTHEGMTTGTPIHVFVPNTDQRGGDYSEMAKAYRP
SHADATYDFKYGVRAVQGGGRSSARETIGRVAAGALAKKILKLKSGVEILAFVSKVHQVVLPED
AVDYDTVTMEQIESNIVRCPDPEYAQKMIDAIDKVRVRGDSIGGVVTCIARNVPRGIGSPVFDK
LEAELAKAMLSLPASKGFEIGSGFAGTDYTGSEHNDEFYMDEAGNVRTRTNRSGGVQGGISNGE
IIYFKVAFKPTATIGR*(-)
Sponge-miRNAs osa-miR156j-5p osa-miR156k
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017