Detail information of Os03g0254800_circ_g.10


General Information
CircRNA Name Os03g0254800_circ_g.10
ID in PlantcircBase osa_circ_018920
Alias NA
Organism Oryza sativa
Position chr3: 8179959-8181019  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0254800
Parent gene annotation Similar to Chorismate synthase 1, chloroplast precursor (EC 4.2.
3.5) (5- enolpyruvylshikimate-3-phosphate phospholyase 1). (Os03
t0254800-01)
Parent gene strand -
Alternative splicing Os03g0254800_circ_g.1 Os03g0254800_circ_g.2 Os03g0254800_circ_g.3 Os03g0254800_circ_g.4 Os03g0254800_circ_g.5 Os03g0254800_circ_g.6 Os03g0254800_circ_g.7 Os03g0254800_circ_g.8 Os03g0254800_circ_g.9 Os03g0254800_circ_g.11 Os03g0254800_circ_g.12
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0254800-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGCATCCACTGATTACGCAACCAACACCGCCTCCATGAGACTCTCCATAAGTTGCAACCTGGA
AGTAGTTCCCAAATACATTTGCAGACGCCTTCACCTctctactccagatttgagcttaagaatt
ttctttgcaagagctcctgcagccacccttccaatggtctctcttgctgatgatcttccacctc
cctatcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTACTCCAGATTTGAGCTTAAGAATTTTCTTTGCAAGAGCTCCTGCAGCCACCCTTCCAATG
GTCTCTCTTGCTGATGATCTTCCACCTCCCTATCATTCGGTTGATAGAAGATGTTGGTTAGGCA
TTCAAGTAAGAGAAGTTTAGGTACCACAGTTTTAGACATTCAAATAAGAGAAGTTTAGGTACTA
CAGTTGATGGTTCAATGAATGGCTATATTACACATTATAAAACATGAAAAAAAGTACCTGCACT
GCTCTAACACCGTATTTGAAGTCATAAGTTGCATCTGCATGTGAAGGTCTGTAGGCCTTAGCCA
TTTCACTGTAATCCTGTGGGAATGAATATGGTTATTTCCAGCTTTAATATGTTACTCCCTCTGT
CCCAAAATATAAGCATTTTTAGCTATGAATCTGGGCAATTGTGTGTCCAGATTCGTAGCCAAAA
GTTGTTATATTTTGGGACGGAGGTAGTATTTCAATACATTAATGCGAAAAAACTTAGGTACTTA
CACCCCCTCTCTGATCTGTGTTCGGGACAAAAACATGAATTGGTGTCCCAGTGGTCATTCCTGC
AGAAAACCCATCAATGCTATCGTGAATATGAGACAAGCTAATACTCTAAATTCAAAAATATTTT
TTCCAAGTTTATCCCATGTCCTGAAAGACACCATACCTTCATGTGTCCCTGAAAGAATTTTGCA
AGTGTCAGTCTCCTTTCTTGGGGTGGTTATTCTGCTCTGGCCTGGCCGTCTGTGATAATCAAAA
TTTTATGTCAGTTAACATTATGGTGTAATGTAACATAACAATCATATTCTGCAAGAGGTTAGCA
GGATTGCATTTGCATAATCCTGTTTTTGACAGAAGCCAGCTGTCAGCACAGAAATAATGGATTT
TTCAAGAGACAAACCTCCGGTCGAGTTCTACTTGCATATCTGCTTCAGTAAGTGGGATTCTGGG
TGGGCATCCACTGATTACGCAACCAACACCGCCTCCATGAGACTCTCCATAAGTTGCAACCTGG
AAGTAGTTCCCAAATACATTTGCAGACGCCTTCACCT
Conservation Information
Conserved circRNAs NA
PMCS 0.13949539
Functional Information
Coding potential Y
Potential coding position 8180956-8180238(+)
8180893-8181016(-)
Potential amino acid sequence MRLSISCNLEVVPKYICRRLHLSTPDLSLRIFFARAPAATLPMVSLADDLPPPCTALTPYLKS*
(+)
MQVELDRRRPGQSRITTPRKETDTCKILSGTHEGMTTGTPIHVFVPNTDQRGGDYSEMAKAYRP
SHADATYDFKYGVRAVQGGGRSSARETIGRVAAGALAKKILKLKSGVER*(-)
Sponge-miRNAs osa-miR156j-5p osa-miR156k
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017