Detail information of BGIOSGA016653_circ_g.1


General Information
CircRNA Name BGIOSGA016653_circ_g.1
ID in PlantcircBase osi_circ_014481
Alias Chr04:25005733_25008031(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 22943660-22945965  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA016653
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016653_circ_igg.1 BGIOSGA016653_circ_g.2 BGIOSGA016653_circ_igg.3 BGIOSGA016653_circ_igg.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016653-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAACAGCTTTTAAGAAGGAAGATGTCAAAAAACCATTGGAAGGATTTGGTGCCTTGATACCCT
ATAAGGAACAGCAAAAGCATGGTCTCAAAACCCTTGggtatggctctgtcattgctggtgccat
cttgtccaaactatccactaagggtgattcagtgaagacaggaggtgcttcgccagggaaagga
aggaataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTATGGCTCTGTCATTGCTGGTGCCATCTTGTCCAAACTATCCACTAAGGGTGATTCAGTGAA
GACAGGAGGTGCTTCGCCAGGGAAAGGAAGGAATAAACGTGTGTCATTTTCATTTCATGGTGGA
ATGCAGGTACTCCACAGATGTCCTGTAGTTTCTTTTGTCAGTGTCAAAGATATCAAAGACAGTG
ATAAACCCTGAACTTTAGTTTGAGCAATTCTACATGCCACTAAAAAATGCCGAATTCATATGTT
GTGAATTGAAGACCTGTTATTTTCCTGCAACTAGGACATATGTTTAGTCGGTGAAACTTCATTG
CTGCTTTAAGAAGTCTTACAGGCCAGAGAAAACTGTCTTGTTTTTTTTTTTTTTGATTTGATGT
CCTGCTTTATATTTATGATCCAGCCAAGCTTATCCATCCATCTGCACCCTGATCCTGCCATAAT
CATTTTTTTTATCAGCCTGACATGAGCTTATTATGTTGCATAAGTTAGGTTGAAGCTAGATCGA
ACAAAAAACTCAAAGCTACTGATAAGTACAGGATATGCAACAGAAGTATCACACGAGCCAAATC
TGCTATAAGAATAAAACATACCAAGAGCCTTAGACACCACTAAATAGTGTGAATGGTAGTGATA
GCGAATAATCTCAGAAGATGACATTTTGGGAAATATTATCGTGTAGTATACTTTATTAATTGGG
AGTTGCGATACTTGCCCTGCACGCTAAACATGCTGAAAAGTTTCACAGTTATACTACATAACAT
CTGGGTGTGTAAAGGTTTTATGTTGTTCATTGCTTTTCAGTCACTAATAGATGCACTTCACAAT
GAAGTTGGAGATGGTAACGTGAAGCTTGGTACAGAAGTGTTGTCATTGGCATGTTGCTGTGATG
GAGTCTCTTCTTCTGGTGGTTGGTCAATTTCTGTTGATTCAAAAGATGCTAAAGGGAAAGATCT
CAGAAAGAACCAATCTTTCGATGCTGTTATAATGACTGTAAGAAAAAAATTATCTGTATTCATC
TCTTTAGAAGCTTGGTCATTTGACAGCCACAAATTAAAATATTTTACCGTGTTTTTCTTTTTGC
CCCTTTAGGCTCCATTGTCTAATGTCCAGAGGATGAAGTTTACAAAAGGTGGAGTTCCCTTTGT
GCTAGACTTTCTTCCTAAGGTCAGGTTAGAATCACTCTTTTAGATTTAACAAATGCAGTGTTGC
ACTAGCATGTTCTTGAGAAATTTGTGCTGGGGGAAATTCCTCTTAATCCTTCAAATTGCATTTA
ATTTCATCCATTAGGTCGATGGATCCATGTCACAGAAAATATTTTGTTTATCTTCTAGATTTCT
ATTATATATGTAAGACTGTCTCTTAGTTTGTGAATTTACAGGAGTCAATCATCACTCCCTTGAA
TCTGAGCATATCAGCAGTTCATCAGCAATATGGTTTATTTGAGAAGGCAACGGAAACTATTGTT
TCCAAAGGCCACTTGTTTGAAACTTTCACCACTGTTTTGAACAGTGTATTAAAGTAACAGTCAT
TTGTATAGCAGCACCTGGTGATTTTTAAGTAAATTTTCCATTCCCAATCAAAACAAGTAACATT
ATATGTTGAACATGTACTGAATTGAATATGGAACTTTATGCTGGAGATGCCAGACTTTATTTTA
CTGGCATGAATACACAATTATTGTAACAATGGTATTATTGCTTGGTTACTTCTCCGCTGTGAAG
ACATACCTTTCGTCACCTTTTCTTGTTTCCCATATTCTGCACCTTATGGGATTGTCTTCCACAT
GTTAAGATGCCTTGTAGTACCAGTTCCCCTATTATTTGAATGTGTTCTTCCTTAGATATATGTG
CATTTGGAACGTGATTGGAAATACAACAGCAAACTGGTATTGTTAGCTGCTTGCCTGCCACAGC
CTACATATGCTGCCATATTACAGAATTATGAGATAGGTGGACTTTGATTTCTGTCATAATGATT
AACTAACTTGATATACTCAAACTATGCAGCTCCTAGCTGGTATCCTTAGAATTTATCGAGTATG
CATAGAAGTCTACTCTTAATCCATATCTATTTGATGTACTCAAACTTGAAACTATGCAGCTCCT
AGCTGGGCTCCTTAGAATTATCAAGTATGCATAGAAATCTTAATCCATATTTATTTATTATATG
CAGGTCGATTATCTACCACTATCTCTCATGGTAACAGCTTTTAAGAAGGAAGATGTCAAAAAAC
CATTGGAAGGATTTGGTGCCTTGATACCCTATAAGGAACAGCAAAAGCATGGTCTCAAAACCCT
TG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021