Detail information of BGIOSGA016653_circ_igg.1


General Information
CircRNA Name BGIOSGA016653_circ_igg.1
ID in PlantcircBase osi_circ_014482
Alias Chr04:25027881_25031687(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 22943660-22947473  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA016653_circ_g.1 BGIOSGA016653_circ_g.2 BGIOSGA016653_circ_igg.3 BGIOSGA016653_circ_igg.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTTGGCTGTTGGAAATGTTATAGCTTCAGGAAGCAAGGCTGCTGACCTTGTGATCTCTTATCT
TGAATCTTGCACAGATCAGGACAATTAGCATTTAAGggtatggctctgtcattgctggtgccat
cttgtccaaactatccactaagggtgattcagtgaagacaggaggtgcttcgccagggaaagga
aggaataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTATGGCTCTGTCATTGCTGGTGCCATCTTGTCCAAACTATCCACTAAGGGTGATTCAGTGAA
GACAGGAGGTGCTTCGCCAGGGAAAGGAAGGAATAAACGTGTGTCATTTTCATTTCATGGTGGA
ATGCAGGTACTCCACAGATGTCCTGTAGTTTCTTTTGTCAGTGTCAAAGATATCAAAGACAGTG
ATAAACCCTGAACTTTAGTTTGAGCAATTCTACATGCCACTAAAAAATGCCGAATTCATATGTT
GTGAATTGAAGACCTGTTATTTTCCTGCAACTAGGACATATGTTTAGTCGGTGAAACTTCATTG
CTGCTTTAAGAAGTCTTACAGGCCAGAGAAAACTGTCTTGTTTTTTTTTTTTTTGATTTGATGT
CCTGCTTTATATTTATGATCCAGCCAAGCTTATCCATCCATCTGCACCCTGATCCTGCCATAAT
CATTTTTTTTATCAGCCTGACATGAGCTTATTATGTTGCATAAGTTAGGTTGAAGCTAGATCGA
ACAAAAAACTCAAAGCTACTGATAAGTACAGGATATGCAACAGAAGTATCACACGAGCCAAATC
TGCTATAAGAATAAAACATACCAAGAGCCTTAGACACCACTAAATAGTGTGAATGGTAGTGATA
GCGAATAATCTCAGAAGATGACATTTTGGGAAATATTATCGTGTAGTATACTTTATTAATTGGG
AGTTGCGATACTTGCCCTGCACGCTAAACATGCTGAAAAGTTTCACAGTTATACTACATAACAT
CTGGGTGTGTAAAGGTTTTATGTTGTTCATTGCTTTTCAGTCACTAATAGATGCACTTCACAAT
GAAGTTGGAGATGGTAACGTGAAGCTTGGTACAGAAGTGTTGTCATTGGCATGTTGCTGTGATG
GAGTCTCTTCTTCTGGTGGTTGGTCAATTTCTGTTGATTCAAAAGATGCTAAAGGGAAAGATCT
CAGAAAGAACCAATCTTTCGATGCTGTTATAATGACTGTAAGAAAAAAATTATCTGTATTCATC
TCTTTAGAAGCTTGGTCATTTGACAGCCACAAATTAAAATATTTTACCGTGTTTTTCTTTTTGC
CCCTTTAGGCTCCATTGTCTAATGTCCAGAGGATGAAGTTTACAAAAGGTGGAGTTCCCTTTGT
GCTAGACTTTCTTCCTAAGGTCAGGTTAGAATCACTCTTTTAGATTTAACAAATGCAGTGTTGC
ACTAGCATGTTCTTGAGAAATTTGTGCTGGGGGAAATTCCTCTTAATCCTTCAAATTGCATTTA
ATTTCATCCATTAGGTCGATGGATCCATGTCACAGAAAATATTTTGTTTATCTTCTAGATTTCT
ATTATATATGTAAGACTGTCTCTTAGTTTGTGAATTTACAGGAGTCAATCATCACTCCCTTGAA
TCTGAGCATATCAGCAGTTCATCAGCAATATGGTTTATTTGAGAAGGCAACGGAAACTATTGTT
TCCAAAGGCCACTTGTTTGAAACTTTCACCACTGTTTTGAACAGTGTATTAAAGTAACAGTCAT
TTGTATAGCAGCACCTGGTGATTTTTAAGTAAATTTTCCATTCCCAATCAAAACAAGTAACATT
ATATGTTGAACATGTACTGAATTGAATATGGAACTTTATGCTGGAGATGCCAGACTTTATTTTA
CTGGCATGAATACACAATTATTGTAACAATGGTATTATTGCTTGGTTACTTCTCCGCTGTGAAG
ACATACCTTTCGTCACCTTTTCTTGTTTCCCATATTCTGCACCTTATGGGATTGTCTTCCACAT
GTTAAGATGCCTTGTAGTACCAGTTCCCCTATTATTTGAATGTGTTCTTCCTTAGATATATGTG
CATTTGGAACGTGATTGGAAATACAACAGCAAACTGGTATTGTTAGCTGCTTGCCTGCCACAGC
CTACATATGCTGCCATATTACAGAATTATGAGATAGGTGGACTTTGATTTCTGTCATAATGATT
AACTAACTTGATATACTCAAACTATGCAGCTCCTAGCTGGTATCCTTAGAATTTATCGAGTATG
CATAGAAGTCTACTCTTAATCCATATCTATTTGATGTACTCAAACTTGAAACTATGCAGCTCCT
AGCTGGGCTCCTTAGAATTATCAAGTATGCATAGAAATCTTAATCCATATTTATTTATTATATG
CAGGTCGATTATCTACCACTATCTCTCATGGTAACAGCTTTTAAGAAGGAAGATGTCAAAAAAC
CATTGGAAGGATTTGGTGCCTTGATACCCTATAAGGAACAGCAAAAGCATGGTCTCAAAACCCT
TGGTAGGTTAATTCAGCTTTACACTTATATTTTATCCAGCTTGTAGCTGCTTATATTTTGATTT
GCGAATTAAAAATTATTAAAACAGCCTTGAAAGAAGAAACCATGTTCGCTGTGGAGACTAGAAA
TTCCCACATTAATTGGGGAAAGAGAAATATTTACACCCTATGATTTTGGCAAGTGCAAGTTTTA
ATGGTTGAGATTGATGGATTGAATATATATCATATTTGGACTCAGTATGAACAAATACCAGATA
CGTAAATAGATAGTACTAATTCAACATGGATCTGAACTGTTGATCAGACCAATTGAGCACTTGG
TTGTAATTGCTCGCGGACTACACGCTTACTGCCTGACTAGGGTTCCATGATGATAAGGTTCGAT
TTTCTAAAATACTATTACAACAAGATGACTATTTAATAAAATTTAAAGAGAATAACGTATATAA
AAATTTAGATAAATTTGGTGCACCGCGCAATTGCGCAGGTCACCCTGCTAGCTGTATTGAACTC
AATATACAAATCAACCTTGCTACATTGCTCTACTTTTTCTCAGGTCTTATTTACTCTGATTTCT
ATTTATTCTAATCTATACATGTCGTCTTGTACAGGGACCCTCTTCTCCTCGATGATGTTTCCAG
ATCGAGCTCCTAATGATCAATATCTATATACATCTTTCATTGGGGGGAGCCATAATAGAGACCT
CGCTGGGGCTCCAACGTATACTTCCATATTATGATCATTTATGTTTTGGTTGTTTTTTCTTTTC
TTGCTAGATTTTTCTGATATATATACTTATGTAGGGCTATTCTGAAACAACTTGTGACCTCTGA
CCTAAGAAAGCTCTTGGGTGTTGAGGGACAACCTACTTTTGTGAAGTAAGTGATAAGAAACTAC
TGCCATGGTTTAGAGTATCTATATGTTTTCTCTTGTTGTGCTTGTGTTATGGTTTTCCATCACT
ATGGAGTTTTGAGGATTCATTCAGGTTTTTGCACTACCACTTGCGAATTCAATATGATGTTCTT
TTACACAGGCATGTACATTGGAGAAATGCTTTTCCTTTATATGGCCAGAATTATGATCTGGTAC
TGGAAGCTATAGCAAAAATGGAGAACAATCTTCCAGGGTTCTTTTACGCAGGCAAGTCAATGAA
GGCACCCCTATTGTACAAAAGAAATCTTAGATATTTGAAACATATTCCTGTTGATTGAGTACGT
GAATAATTTGCTGTTTCTAGTAAGTCAATTTGGTATTTCTCATGCAACTTATGGGGCTCCTTGA
TTTGCTGAGAATGATGAGTTTCCTAGAGCAAGCCAGGAACTGTAATCCCAGCATGTAATACTTT
ACCTTGAAATTAACTTCAAAAAAATAATTGAAGCTTTTTCTGTATCTGTAGGAAATAACAAGGA
TGGGTTGGCTGTTGGAAATGTTATAGCTTCAGGAAGCAAGGCTGCTGACCTTGTGATCTCTTAT
CTTGAATCTTGCACAGATCAGGACAATTAGCATTTAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021