Plant Circular RNA Database

Detail information of Os10g0431000_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os10g0431000_circ_g.5
					
						ID in PlantcircBase
						osa_circ_006866
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr10: 15363346-15364889  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os10g0431000						
					
						Parent gene annotation
						
							Similar to predicted protein. (Os10t0431000-01);Non-protein codi
ng transcript. (Os10t0431000-02);Similar to DNA-binding protein-
like. (Os10t0431000-03)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os10g0431000_circ_g.1 Os10g0431000_circ_igg.1 Os10g0431000_circ_igg.2 Os10g0431000_circ_g.3 Os10g0431000_circ_g.4 Os10g0431000_circ_g.6 Os10g0431000_circ_g.7 Os10g0431100_circ_ig.1 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os10t0431000-03:5

General Information
CircRNA Name	Os10g0431000_circ_g.5
ID in PlantcircBase	osa_circ_006866
Alias	NA
Organism	Oryza sativa
Position	chr10: 15363346-15364889 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os10g0431000
Parent gene annotation	Similar to predicted protein. (Os10t0431000-01);Non-protein codi ng transcript. (Os10t0431000-02);Similar to DNA-binding protein- like. (Os10t0431000-03)
Parent gene strand	+
Alternative splicing	Os10g0431000_circ_g.1 Os10g0431000_circ_igg.1 Os10g0431000_circ_igg.2 Os10g0431000_circ_g.3 Os10g0431000_circ_g.4 Os10g0431000_circ_g.6 Os10g0431000_circ_g.7 Os10g0431100_circ_ig.1
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os10t0431000-03:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GAAGGAACCATGGAGTCTAAAATTCTGAAAGAAAAAACACCAGAAGCAACACCTGTTGTGAAAG
AGTCACAGGAAAAAATGCCTGTTGTGGGCGAACAAGgacgtggtggtctggaacgtaggacacc
tcctgcaggctatgtctgtcatagatgtaaagtgcctggtatgatgatgactaatgtcaagtct
ttggtaat

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 834
Transcript exons: 15363346-15363411,15363489-15363645,15363745-15363893,15
364079-15364246,15364596-15364889
GACGTGGTGGTCTGGAACGTAGGACACCTCCTGCAGGCTATGTCTGTCATAGATGTAAAGTGCC
TGGTCATTTCATTCAACATTGCCCAACAAATGGTGATGCTAGATTTGACATGAAAAGGATGAAA
CCTCCAACTGGCATTCCAAAATCTATGTTGATGGCAACCCCAGATGGCTCATATGCACTACCAA
GTGGGGCTGGTGCTGTCTTGAAGCCAAATGAAGCTGCTTTTGAGAAGGAGATAGAGGGATTACC
CACAACCCGCTCACTTGGTGATCTTCCACCAGAGTTACGTTGCCCATTGTGTAAAGAAGTAATG
AAGGATGCTGTTCTAACTAGTAAATGCTGCTTTAGGAGTTTCTGTGATAAATGCATTAGGGACT
ACATTATAAACAAGTCAATGTGTGTCTGTGGTGCCACAAGCATATTAGCAGACGATCTTCTCCC
CAATAAAACTCTAAGAGAAACCATCAGCCGGATATTAGAGGCACCACCAACTAGCAGTACAGAA
AATGTGGGAAGCATGGTGCAAGTACAGGATATGGAGTCAGCTATTCCTGTACAGCCCAAGGTTA
GGTCTCCAGCTGTTTCTGCTGCTTCAAAGGAAGAACCAAAAAGAACACCTGCACCTGTAGAAGA
GTCTCCAGATGTTGAGAGCCATAGCGAAGTGAAAACTACAAATGTTGATATGAGTTCTTCAGAT
AAGAAGGTCCCCGCATTACCAGATGTTGTTGAAGGAACCATGGAGTCTAAAATTCTGAAAGAAA
AAACACCAGAAGCAACACCTGTTGTGAAAGAGTCACAGGAAAAAATGCCTGTTGTGGGCGAACA
AG
						
					

						Genomic sequence
						
							GACGTGGTGGTCTGGAACGTAGGACACCTCCTGCAGGCTATGTCTGTCATAGATGTAAAGTGCC
TGGTATGATGATGACTAATGTCAAGTCTTTGGTAATGAAAAATCATGCTATGCTATTGCTCAGA
AGTCTTCATTTTTAGGTCATTTCATTCAACATTGCCCAACAAATGGTGATGCTAGATTTGACAT
GAAAAGGATGAAACCTCCAACTGGCATTCCAAAATCTATGTTGATGGCAACCCCAGATGGCTCA
TATGCACTACCAAGTGGGGCTGGTGCTGTCTTGAAGCCAAATGAGTGAGTGCAAACTTCAAAGT
TTGTTGAATTACTTCTGCAATGCAAAAACAATGTTACATGTGCTTATCAAAGACCAAACTTAAT
TTTGTTTTGTGATAGAGCTGCTTTTGAGAAGGAGATAGAGGGATTACCCACAACCCGCTCACTT
GGTGATCTTCCACCAGAGTTACGTTGCCCATTGTGTAAAGAAGTAATGAAGGATGCTGTTCTAA
CTAGTAAATGCTGCTTTAGGAGTTTCTGTGATAAATGTAAGTTATGCTTATAAAAACATATTTA
TTTACATGTCATTGGTGCCACTGTCATTTTACGAGTTTGTCTATGGGATAACCATAAATTGTGT
GCTTTTTTCCTTCCCCTTATCTTGATCTTCATTTCCGAGCTTCAAATATGTACACTTTTTAATG
AGGTGGCATGCTGCTATGTTCTTTTGCAGGCATTAGGGACTACATTATAAACAAGTCAATGTGT
GTCTGTGGTGCCACAAGCATATTAGCAGACGATCTTCTCCCCAATAAAACTCTAAGAGAAACCA
TCAGCCGGATATTAGAGGCACCACCAACTAGCAGTACAGAAAATGTGGGAAGCATGGTGCAAGT
ACAGGGTATATACACATATATCTATCACTTATAACAGATACTCCCTCTAGGTTGATATTACTTG
TCGTTCTATACAAGGACACGGTCTCCAAAAAATTAACCTAAAAACAACTTTGACTACTATTTTC
TATTATAATATATATATAAATATCGACAAATATATGATTTTATTGAAGTACATTTTAAGACTAA
TAGACATATGGTCTCCATATTTCTAAGACCAATATTTTAAAAATTATTCATAGTCAAGGATTTT
AAAGTTTGACTTCACCCTTGTCCAAAACGACAAGTATTATCAACCCGGAGGGAGTACTTAGTAT
AGACTATTTGAACTGATGCTAGTACTTTGCGCAGATATGGAGTCAGCTATTCCTGTACAGCCCA
AGGTTAGGTCTCCAGCTGTTTCTGCTGCTTCAAAGGAAGAACCAAAAAGAACACCTGCACCTGT
AGAAGAGTCTCCAGATGTTGAGAGCCATAGCGAAGTGAAAACTACAAATGTTGATATGAGTTCT
TCAGATAAGAAGGTCCCCGCATTACCAGATGTTGTTGAAGGAACCATGGAGTCTAAAATTCTGA
AAGAAAAAACACCAGAAGCAACACCTGTTGTGAAAGAGTCACAGGAAAAAATGCCTGTTGTGGG
CGAACAAG
						
					

			
		

Sequences
Splice junction sequence	GAAGGAACCATGGAGTCTAAAATTCTGAAAGAAAAAACACCAGAAGCAACACCTGTTGTGAAAG AGTCACAGGAAAAAATGCCTGTTGTGGGCGAACAAGgacgtggtggtctggaacgtaggacacc tcctgcaggctatgtctgtcatagatgtaaagtgcctggtatgatgatgactaatgtcaagtct ttggtaat
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 834 Transcript exons: 15363346-15363411,15363489-15363645,15363745-15363893,15 364079-15364246,15364596-15364889 GACGTGGTGGTCTGGAACGTAGGACACCTCCTGCAGGCTATGTCTGTCATAGATGTAAAGTGCC TGGTCATTTCATTCAACATTGCCCAACAAATGGTGATGCTAGATTTGACATGAAAAGGATGAAA CCTCCAACTGGCATTCCAAAATCTATGTTGATGGCAACCCCAGATGGCTCATATGCACTACCAA GTGGGGCTGGTGCTGTCTTGAAGCCAAATGAAGCTGCTTTTGAGAAGGAGATAGAGGGATTACC CACAACCCGCTCACTTGGTGATCTTCCACCAGAGTTACGTTGCCCATTGTGTAAAGAAGTAATG AAGGATGCTGTTCTAACTAGTAAATGCTGCTTTAGGAGTTTCTGTGATAAATGCATTAGGGACT ACATTATAAACAAGTCAATGTGTGTCTGTGGTGCCACAAGCATATTAGCAGACGATCTTCTCCC CAATAAAACTCTAAGAGAAACCATCAGCCGGATATTAGAGGCACCACCAACTAGCAGTACAGAA AATGTGGGAAGCATGGTGCAAGTACAGGATATGGAGTCAGCTATTCCTGTACAGCCCAAGGTTA GGTCTCCAGCTGTTTCTGCTGCTTCAAAGGAAGAACCAAAAAGAACACCTGCACCTGTAGAAGA GTCTCCAGATGTTGAGAGCCATAGCGAAGTGAAAACTACAAATGTTGATATGAGTTCTTCAGAT AAGAAGGTCCCCGCATTACCAGATGTTGTTGAAGGAACCATGGAGTCTAAAATTCTGAAAGAAA AAACACCAGAAGCAACACCTGTTGTGAAAGAGTCACAGGAAAAAATGCCTGTTGTGGGCGAACA AG
Genomic sequence	GACGTGGTGGTCTGGAACGTAGGACACCTCCTGCAGGCTATGTCTGTCATAGATGTAAAGTGCC TGGTATGATGATGACTAATGTCAAGTCTTTGGTAATGAAAAATCATGCTATGCTATTGCTCAGA AGTCTTCATTTTTAGGTCATTTCATTCAACATTGCCCAACAAATGGTGATGCTAGATTTGACAT GAAAAGGATGAAACCTCCAACTGGCATTCCAAAATCTATGTTGATGGCAACCCCAGATGGCTCA TATGCACTACCAAGTGGGGCTGGTGCTGTCTTGAAGCCAAATGAGTGAGTGCAAACTTCAAAGT TTGTTGAATTACTTCTGCAATGCAAAAACAATGTTACATGTGCTTATCAAAGACCAAACTTAAT TTTGTTTTGTGATAGAGCTGCTTTTGAGAAGGAGATAGAGGGATTACCCACAACCCGCTCACTT GGTGATCTTCCACCAGAGTTACGTTGCCCATTGTGTAAAGAAGTAATGAAGGATGCTGTTCTAA CTAGTAAATGCTGCTTTAGGAGTTTCTGTGATAAATGTAAGTTATGCTTATAAAAACATATTTA TTTACATGTCATTGGTGCCACTGTCATTTTACGAGTTTGTCTATGGGATAACCATAAATTGTGT GCTTTTTTCCTTCCCCTTATCTTGATCTTCATTTCCGAGCTTCAAATATGTACACTTTTTAATG AGGTGGCATGCTGCTATGTTCTTTTGCAGGCATTAGGGACTACATTATAAACAAGTCAATGTGT GTCTGTGGTGCCACAAGCATATTAGCAGACGATCTTCTCCCCAATAAAACTCTAAGAGAAACCA TCAGCCGGATATTAGAGGCACCACCAACTAGCAGTACAGAAAATGTGGGAAGCATGGTGCAAGT ACAGGGTATATACACATATATCTATCACTTATAACAGATACTCCCTCTAGGTTGATATTACTTG TCGTTCTATACAAGGACACGGTCTCCAAAAAATTAACCTAAAAACAACTTTGACTACTATTTTC TATTATAATATATATATAAATATCGACAAATATATGATTTTATTGAAGTACATTTTAAGACTAA TAGACATATGGTCTCCATATTTCTAAGACCAATATTTTAAAAATTATTCATAGTCAAGGATTTT AAAGTTTGACTTCACCCTTGTCCAAAACGACAAGTATTATCAACCCGGAGGGAGTACTTAGTAT AGACTATTTGAACTGATGCTAGTACTTTGCGCAGATATGGAGTCAGCTATTCCTGTACAGCCCA AGGTTAGGTCTCCAGCTGTTTCTGCTGCTTCAAAGGAAGAACCAAAAAGAACACCTGCACCTGT AGAAGAGTCTCCAGATGTTGAGAGCCATAGCGAAGTGAAAACTACAAATGTTGATATGAGTTCT TCAGATAAGAAGGTCCCCGCATTACCAGATGTTGTTGAAGGAACCATGGAGTCTAAAATTCTGA AAGAAAAAACACCAGAAGCAACACCTGTTGTGAAAGAGTCACAGGAAAAAATGCCTGTTGTGGG CGAACAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.289007966

Conservation Information
Conserved circRNAs	NA
PMCS	0.289007966

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							15363537-15364886(+)
15363507-15364858(-)
						
						Potential amino acid sequence
						
							MKRMKPPTGIPKSMLMATPDGSYALPSGAGAVLKPNEAAFEKEIEGLPTTRSLGDLPPELRCPL
CKEVMKDAVLTSKCCFRSFCDKCIRDYIINKSMCVCGATSILADDLLPNKTLRETISRILEAPP
TSSTENVGSMVQVQDMESAIPVQPKVRSPAVSAASKEEPKRTPAPVEESPDVESHSEVKTTNVD
MSSSDKKVPALPDVVEGTMESKILKEKTPEATPVVKESQEKMPVVGEQGRGGLERRTPPAGYVC
HRCKVPGHFIQHCPTNGDARFDMKRMKPPTGIPKSMLMATPDGSYALPSGAGAVLKPNEAAFEK
EIEGLPTTRSLGDLPPELRCPLCKEVMKDAVLTSKCCFRSFCDKCIRDYIINKSMCVCGATSIL
ADDLLPNKTLRETISRILEAPPTSSTENVGSMVQVQDMESAIPVQPKVRSPAVSAASKEEPKRT
PAPVEESPDVESHSEVKTTNVDMSSSDKKVPALPDVVEGTMESKILKEKTPEATPVVKESQEKM
PVVGEQGRGGLERRTPPAGYVCHRCKVPGHFIQHCPTNGDARFDMKRMKPPTGIPKSMLMATPD
GSYALPSGAGAVLKPNEAAFEKEIEGLPTTRSLGDLPPELRCPLCKEVMKDAVLTSKCCFRSFC
DKCIRDYIINKSMCVCGATSILADDLLPNKTLRETISRILEAPPTSSTENVGSMVQVQDMESAI
PVQPKVRSPAVSAASKEEPKRTPAPVEESPDVESHSEVKTTNVDMSSSDKKVPALPDVVEGTME
SKILKEKTPEATPVVKESQEKMPVVGEQGRGGLERRTPPAGYVCHRCKVPGHFIQHCPTNGDAR
FDMKRMKPPTGIPKSMLMATPDGSYALPSGAGAVLKPNEAAFEKEIEGLPTTRSLGDLPPELRC
PLCKEVMKDAVLTSKCCFRSFCDKCIRDYIINKSMCVCGATSILADDLLPNKTLRETISRILEA
PPTSSTENVGSMVQVQDMESAIPVQPKVRSPAVSAASKEEPKRTPAPVEESPDVESHSEVKTTN
VDMSSSDKKVPALPDVVEGTMESKILKEKTPEATPVVKESQEKMPVVGEQ(+)
MLNEMTRHFTSMTDIACRRCPTFQTTTSLFAHNRHFFL*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	15363537-15364886(+) 15363507-15364858(-)
Potential amino acid sequence	MKRMKPPTGIPKSMLMATPDGSYALPSGAGAVLKPNEAAFEKEIEGLPTTRSLGDLPPELRCPL CKEVMKDAVLTSKCCFRSFCDKCIRDYIINKSMCVCGATSILADDLLPNKTLRETISRILEAPP TSSTENVGSMVQVQDMESAIPVQPKVRSPAVSAASKEEPKRTPAPVEESPDVESHSEVKTTNVD MSSSDKKVPALPDVVEGTMESKILKEKTPEATPVVKESQEKMPVVGEQGRGGLERRTPPAGYVC HRCKVPGHFIQHCPTNGDARFDMKRMKPPTGIPKSMLMATPDGSYALPSGAGAVLKPNEAAFEK EIEGLPTTRSLGDLPPELRCPLCKEVMKDAVLTSKCCFRSFCDKCIRDYIINKSMCVCGATSIL ADDLLPNKTLRETISRILEAPPTSSTENVGSMVQVQDMESAIPVQPKVRSPAVSAASKEEPKRT PAPVEESPDVESHSEVKTTNVDMSSSDKKVPALPDVVEGTMESKILKEKTPEATPVVKESQEKM PVVGEQGRGGLERRTPPAGYVCHRCKVPGHFIQHCPTNGDARFDMKRMKPPTGIPKSMLMATPD GSYALPSGAGAVLKPNEAAFEKEIEGLPTTRSLGDLPPELRCPLCKEVMKDAVLTSKCCFRSFC DKCIRDYIINKSMCVCGATSILADDLLPNKTLRETISRILEAPPTSSTENVGSMVQVQDMESAI PVQPKVRSPAVSAASKEEPKRTPAPVEESPDVESHSEVKTTNVDMSSSDKKVPALPDVVEGTME SKILKEKTPEATPVVKESQEKMPVVGEQGRGGLERRTPPAGYVCHRCKVPGHFIQHCPTNGDAR FDMKRMKPPTGIPKSMLMATPDGSYALPSGAGAVLKPNEAAFEKEIEGLPTTRSLGDLPPELRC PLCKEVMKDAVLTSKCCFRSFCDKCIRDYIINKSMCVCGATSILADDLLPNKTLRETISRILEA PPTSSTENVGSMVQVQDMESAIPVQPKVRSPAVSAASKEEPKRTPAPVEESPDVESHSEVKTTN VDMSSSDKKVPALPDVVEGTMESKILKEKTPEATPVVKESQEKMPVVGEQ(+) MLNEMTRHFTSMTDIACRRCPTFQTTTSLFAHNRHFFL*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os10g0431000_circ_g.5

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