Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d012525_circ_g.1 |
ID in PlantcircBase | zma_circ_002870 |
Alias | circ1348 |
Organism | Zea mays |
Position | chr8: 176072964-176073428 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI |
Parent gene | Zm00001d012525 |
Parent gene annotation |
Protein MOR1 |
Parent gene strand | + |
Alternative splicing | Zm00001d012525_circ_g.2 Zm00001d012525_circ_g.3 |
Support reads | 6 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-CA |
Number of exons covered | Zm00001d012525_T025:3 Zm00001d012525_T040:3 Zm00001d012525_T060:3 Zm00001d012525_T064:1 Zm00001d012525_T002:3 Zm00001d012525_T012:3 Zm00001d012525_T066:1 Zm00001d012525_T021:3 Zm00001d012525_T044:3 Zm00001d012525_T037:3 Zm00001d012525_T019:3 Zm00001d012525_T051:3 Zm00001d012525_T031:3 Zm00001d012525_T059:3 Zm00001d012525_T041:3 Zm00001d012525_T056:3 Zm00001d012525_T017:3 Zm00001d012525_T048:3 Zm00001d012525_T004:3 Zm00001d012525_T057:3 Zm00001d012525_T030:3 Zm00001d012525_T045:3 Zm00001d012525_T001:3 Zm00001d012525_T035:3 Zm00001d012525_T049:3 Zm00001d012525_T061:3 Zm00001d012525_T015:3 Zm00001d012525_T024:3 Zm00001d012525_T033:3 Zm00001d012525_T054:3 Zm00001d012525_T022:3 Zm00001d012525_T020:3 Zm00001d012525_T008:3 Zm00001d012525_T039:3 Zm00001d012525_T003:3 Zm00001d012525_T043:3 Zm00001d012525_T028:3 Zm00001d012525_T038:3 Zm00001d012525_T005:3 Zm00001d012525_T052:3 Zm00001d012525_T029:3 Zm00001d012525_T047:3 Zm00001d012525_T010:3 Zm00001d012525_T026:3 Zm00001d012525_T032:3 Zm00001d012525_T018:3 Zm00001d012525_T014:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.424089409 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |