Detail information of BGIOSGA021508_circ_ig.1


General Information
CircRNA Name BGIOSGA021508_circ_ig.1
ID in PlantcircBase osi_circ_016892
Alias Chr06:7994768_7999694(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 9312274-9317200  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA021508_circ_igg.3 BGIOSGA021508_circ_igg.4 BGIOSGA021508_circ_ig.2 BGIOSGA021508_circ_ig.3 BGIOSGA021508_circ_ig.4 BGIOSGA021508_circ_ig.5 BGIOSGA021508_circ_ig.6 BGIOSGA021508_circ_ig.7 BGIOSGA021508_circ_ig.8 BGIOSGA021508_circ_ig.9 BGIOSGA021508_circ_ig.10 BGIOSGA021508_circ_ig.11 BGIOSGA021508_circ_ig.12 BGIOSGA021508_circ_ig.13 BGIOSGA021508_circ_ig.14 BGIOSGA021508_circ_ig.15 BGIOSGA021508_circ_ig.16 BGIOSGA021508_circ_ig.17 BGIOSGA021508_circ_ig.18 BGIOSGA021507_circ_ig.1 BGIOSGA021507_circ_ig.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCGGTCGAAGTTGTACAACCCTGGATATTGTAATAAGTCCAAACTTGTACAAGAAAATATTAT
CTCGTTAATATAAGAAAAGGCAGAACTCCAGCCTTCcatagaatggaaaggtagaaacatcaag
atcatagacaagcccacataacagtcaacactttaacaacatcaatcaccacgcttcaactgga
aaaagaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATAGAATGGAAAGGTAGAAACATCAAGATCATAGACAAGCCCACATAACAGTCAACACTTTAA
CAACATCAATCACCACGCTTCAACTGGAAAAAGAAAGCAGAAAATATTTAGCATAGAAGTTAGG
CCTCAAATATGATGTTCTGCAAACAATGTACAGTGCAGATTACAGATTAGTATAAACTTTTAGG
ATGCAAAGCAAGTCGGTAGTTTTCTCATGTACAGATCATACCTATGTTGTTTTATTTGATTGGC
TACATTCTGTGGCATGTAAACTACTGAAATGCACTTAAAAGAAAGATATTAAGCATCTGCAGAT
TAGGTCATCAGTGCCAAAAACACAATACCAATATTCTCTATATTCAATGAGATTATATATGTGA
CCAATTCAACGGAGCAACACAACAGTACAAAGAACATATGTTTCCACTATTTATAAGCAGCAAA
TAAAATTATTAGCACTATCTTGGTACTAAAAATTGGTTTTCATCCCTCCAAAATTTGGGTTAAT
ATCATCCTTATGGATGTAGAGGAACAAAATACAGTTTGGTATAGTGTATTACTCTTCTTCTCAT
GAGATCTAAGCTAAAATGCTAAATAGCAAGAGAAAGCTTGAACGGAAACTTCAATTAATATAAT
GCTCGTTCAGTTGCTCATTTTATTAATAAATATTTTTTGGTAAAAATAATTGCATTCAAAATGT
AGGGAACAATCAAGAATAAGACCAATTGCATTCAGCAAGCAATTTACTATCTCGCTTTAACTCT
TCCCTTAGAGCAAAATAAATAAAACTAAACAACCAAGAGTAAGATGCTTAAAAAAGAGGAGATT
CCAAAAAGTTTTTTTTTTGCGACATAACTGCAAAAGCTTTTAACTATAATGCTGGCATGTAAAT
GCAGGCAAAAGAACACTGTTGTGTTAACAGCACTATCCTAATTTGAGTCCTGAGCATAATTGTG
TGTGGCTTTTCTGAGCTACTTGGAGTAGATCTTCACATTTTTTTATGATCGCTATATCTAGGAA
AGAATAGGCTCAGTCACAAGGTATCTGGATGTTTTAGAAGAATAAGATTTAATGAAACGTGAAG
ATTTACCTTTGTCATACTGCACAAATGAAAGAAACTAATTACTATAATTCAGTGTTTTTCTTCA
AGGTTCTTCAGAGTCCAGATAATATCTTCAGAAGCTCAATCTTAGGTTCTCAATTTAACCGACA
TAATCAAAATCTTCAATTAACACAGTCAGGAGCTCATCTTCATCATCTGGTAACAGACTTCCAT
TCAAATGTTGTGCAACATCAATCATGAGGCCTGCAACTCTAGTATTAGTGAATGACTGCTTCAC
TATGCAAAACAAATAATCCTTTTGTTAAGCACTGCGCTCCCTTTCTTTACCTGGCACTGCATGA
GACACCTTGATGTGAATTTATGGAAATTGATCACAGATTTTTAAAAAAATCTCTAAATGTTTTG
CAAATGGCAGAACTTATTGCAATGAGCATCAACTTGATGTTAGGTACTGGTGTTGTGCTTGCAA
GGTCCCATCTTTCGAACTTTCTTCTCGAGTTCTCCTAGAAAAAAAGATCTGATCATTACTTCGA
TCCCAGCTGATGAGTTCTTTTAGATGGAATGGATGCAGGTTTTGTAGAACATCATAAATATGCC
AGGATTAGGGTCTCTCAAAATTACATCACCAATTGCAACCAATCCCAGATTTCCTTTCAACACG
ATCCTAGGTAATCAACAGATATTCCAAGATAGTTCACTATTACAGACAAATAACATACCATTAA
TTCTGTACTCTGCAAGTTAAAGTAACTTTTCTATTGTACTAATTATCAATGTCATGAAGCTATC
ATGTTTCCTATTTTCTGCATCTATAGCTCTATCGAGTATCCCATGAGATGTTGAAATGTCAAAT
AAGATAAAAAAGGTATAAATTTCAGATTCAGTGAGAAAAGATATAAATCTTTTATATATGTTCC
TAGTAAATAATACGATACCCTTCTTAGCAACTTGATCTTCTGGAAAAGTTTAGGCACATCATTT
CATACAAATAAAACTGCCTATGTTAATTTGTTGAACATATCATGGAACTCAAAATAGAACAATC
CTTATGATGCTTCAGTAGCCAAAAGGGTTAAAAATAAGGGTTTTTTGAATGAAGCAGAGTAGGA
ATACAAACTTTTTCTCTTACTATATCTAGAAAAAGAATATTCTCATTAGCTGTTCTGAACCACG
CTAACTGCAGCAATGCAGCTCCTGCTGAAAAACAAAAAGAAACAGTCAGAACTAATGACCAAAC
AGGACACTATCTATTAGCACATTTTCTATTATGAAATCTTCACCCGGAAGATACTATATAGTGA
CAAGCGTGCCATTATAAAAGTTTTAGTGCTTTGGCATACAACATATCTTTCGCAAGGACTGAAA
TCTGATACTTGGAATCTAACATGATGGAAGAAATTTCTCTTAAACGGTGTCTAGCTAGCAATAC
CAACACCATGTAACATGAACACTGATGGAGGAAAATCAAGATGTTTATTGTTCATAAAGTGATC
ACCATTTATACATAAATAGAATAAAAAACCACTACGATTTAACTTTCAACATAGATACACTAAC
CAAATATAGAAGTAAGAACCATAAACATCTAAGATAGAAGTGACTAACCAAATATAGAAGGGTC
AGAATTTGGTTAAAACTGCCATATCTAAGATGTTTGCTCTTGTTTCATGACCTGAAAATTAAAG
AGTGATATAATCAGTGAAACTTAGCATCTAATGTATTTATCAATTCTTGTTGTAGCATTGCAGA
TAAATCTGTTCTACCTTGATTTTATTTTCCAAGTTAGATATGGCAGCTGCCCATAATTTCTTGG
CATTGTCATACTTTTGGGAAACACTTCTCAGTTGATCAGCTTGTGTGTCAAGGACCTGTTCTGT
CAGGAATGTAAAACACTGGTGAGCATACATAAGCATCTTATCTGAAAATTACCTGGCAAGTCAC
AAACAACTCTGTGTCCAGCTATTTGCACAAGCAAGGTAAAAAAACACATCATAAACTGTGTGTA
GCTATCCCCATAGTAATGGTCAATTGTCATTCAGACAATGTTTTTCCATTACATGCTTTGGAAT
AGTAAATGATGTGTTTATAATGGCTATTCCGTTACACATCATATTTTGATGCATCAGATGCCCA
CAGTAAGATGTTTATATGCCTATTTGCATGTTGTATCAGTAGAAAAGGCTTCAAGGCTTAGCTC
CCTATTTCCTAATGATATCCTTGTGTAGCATTAGTTACATATTCTGTTGCTTAATCAATCAAAA
AAACATTCAGTAGGATAAGGATTATTAGTTTCCACTTTGGGGCATTTTCTTTTTGGACTGTGAT
ACTGTATGTGTCTGCACTTTTCAAGTAAAGAAATGGTGCCATAAGAGGGACATGATCAAATGAC
ATTGTTTCTATAAATTATATGCAGACAGAGTGGAGAAGGCAGAGAAGACACGATGGATGACACT
AAAAGAACCTTTCCTCCCAAATCTGTCAAACAACCAATGTTACAACTGGACATACATACCTCTC
TCGCTGCTACCCGTGTCGACAGTAGCACGATCTCGCCGACAATCGTCGTTGTGCCGCACTTGAA
TAGTCGAGAGAACAGCGACAGCATGGCGGTTGCACTGGAGGAAGAGGAGGGAGAAGGAGCCATC
AAGAAGGAGACATTTATCCATTCAGATCTAGCCCAAAAACAACACAAGGAATCTTTTACCTCCA
CACAGGGCAGATGAGGAAGAAAGTGGCAGGGAGATGAGAAGAGGAAAGAAGACGAGGATGAGAA
GAGGAAAGGAGAGGAGATCCATGGGAGGAAGATGAGAGACGAGGTAGTGGCTGGCTTACCATCA
AGGTCGTCACTTGATCTACAATCACCGACCCACACCGCCTCCATCTGCCCTCGCCGGTGAGGGG
AGGAGAAAAGGGGCTCCATCGATGTGTGTCAACAGAAATCATACTGAAAGAGGGCTCAAAAGAA
TTGTTTTGGCAAGATAACTGAATCAAAACTAAGAGCCTAGAGATATAGCACATAATCTATAGAA
GTTGGCAAAGTGGAAGTGTCGAAATGTGACAACTGAAATCTCGGACAACAATGGCTTACTATGC
TTCGGCCAATAATAACGATTGAGGAGATAAATGAGTTAGTCACTCTAGCCCATCCCTTTCAAAA
CACAGTTTTAATCACCGGAGAAAAGGATGACATAAGATGGAGATGGATAAATTCAGGTGAATAC
TCTACATAATCAGCTTACAGGGCGCAATTTAAAGGTTCCTTTACGAGGTTTAATTTCAAACAAC
TAAGGAAGGGAATGTGGAGCCAAAATCATTTTTTTTCAGCTGGCTGGTTTTGCATCAAAAGGCT
CTAACTGCAGGTAACCTTCTGCGCCATAGATGACCATGCAATTGGATTTGTTGTTATCTGTGTG
GTGAGGCTTTCGAAACAACAAACCATTTGGCCACCAAATGTTTTACCAAGGTCTTAGACATGGT
ATGTTGATGGCGAGGCCTCACATGCAAACTACCTCAAAGCCCCTAAACAAGATTAACCAAAAGA
TGGGATAGTTTGTGCAAAATCACACCTAAACATACAAGGAAGAAAATTATCACAATTCAGTCGG
TTATTTTGGTGGAACTTTTGGCTGGAAGAATAGAATGTTTTCTAAGATGAACACCAACAGGAAG
AACAGGTTGCTACCTTGGTGATCCAGAACATAAATGAAAGAGCTTTTGTGGTTAATTACATAGA
GTAAATCTTATTTACCTCTCTTATGGTTCCGGTCGAAGTTGTACAACCCTGGATATTGTAATAA
GTCCAAACTTGTACAAGAAAATATTATCTCGTTAATATAAGAAAAGGCAGAACTCCAGCCTTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021