Detail information of Bra000144_circ_g.1


General Information
CircRNA Name Bra000144_circ_g.1
ID in PlantcircBase bra_circ_000110
Alias A03:9554468|9554991
Organism Brassica rapa
Position chrA03: 9554468-9554991  JBrowse»
Reference genome Brassica rapa v2
Type   ie-circRNA
Identification method Find_circ
Parent gene Bra000144
Parent gene annotation NA
Parent gene strand -
Alternative splicing Bra000144_circ_g.2 Bra000144_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Bra0A0A0A144:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGCGTTTTCTTCCTTGTTGTACATTCCCGGGAGCTGGACGTTGGTTGGGTTATCAGCAATGTT
CATGAGGGTTGCGTTAACCATCTGGTTGTTGACTGTcttctcaagagtcatcgctggttgctcg
aacactggaggaccttccctagagttcaccagcctctttcctatcttctcaactccaagtccct
caacgaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCTCAAGAGTCATCGCTGGTTGCTCGAACACTGGAGGACCTTCCCTAGAGTTCACCAGCCTC
TTTCCTATCTTCTCAACTCCAAGTCCCTCAACGAACTTCCTCACTTCATCATCGTACACTCTCG
CCCTCAATGCACCAAAGAAATCTATCCACACAATAAAAGAATCAGAATCACATGAAAAAAAGAC
AATAATAACAAGTACTCGTGATCATCTTTATTACCGATAGATTGTCCAGGGAACTGGTCAACAA
GCGTGACAATGTCTTCATCCTTAACGTTATCAGTCCTGAAGATACCCTTGCAGACACCAATACG
GTCCTCACGTGTGGGTGCCCAGTAGAACTTCTCCATACGCCCGTCACGGATGAGAGGTGCGTAG
AGAGTGGAGAAATCGTTACCGGTGACGATGATGGGGACACGTGCGTTTTCTTCCTTGTTGTACA
TTCCCGGGAGCTGGACGTTGGTTGGGTTATCAGCAATGTTCATGAGGGTTGCGTTAACCATCTG
GTTGTTGACTGT
Conservation Information
Conserved circRNAs NA
PMCS 1.079871173
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Wang et al., 2019