Detail information of Bra000144_circ_g.2


General Information
CircRNA Name Bra000144_circ_g.2
ID in PlantcircBase bra_circ_000111
Alias A03:9554518|9554910
Organism Brassica rapa
Position chrA03: 9554518-9554910  JBrowse»
Reference genome Brassica rapa v2
Type   ie-circRNA
Identification method Find_circ
Parent gene Bra000144
Parent gene annotation NA
Parent gene strand -
Alternative splicing Bra000144_circ_g.1 Bra000144_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Bra0A0A0A144:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAACTTCTCCATACGCCCGTCACGGATGAGAGGTGCGTAGAGAGTGGAGAAATCGTTACCGGT
GACGATGATGGGGACACGTGCGTTTTCTTCCTTGTTagttcaccagcctctttcctatcttctc
aactccaagtccctcaacgaacttcctcacttcatcatcgtacactctcgccctcaatgcacca
aagaaatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTTCACCAGCCTCTTTCCTATCTTCTCAACTCCAAGTCCCTCAACGAACTTCCTCACTTCATC
ATCGTACACTCTCGCCCTCAATGCACCAAAGAAATCTATCCACACAATAAAAGAATCAGAATCA
CATGAAAAAAAGACAATAATAACAAGTACTCGTGATCATCTTTATTACCGATAGATTGTCCAGG
GAACTGGTCAACAAGCGTGACAATGTCTTCATCCTTAACGTTATCAGTCCTGAAGATACCCTTG
CAGACACCAATACGGTCCTCACGTGTGGGTGCCCAGTAGAACTTCTCCATACGCCCGTCACGGA
TGAGAGGTGCGTAGAGAGTGGAGAAATCGTTACCGGTGACGATGATGGGGACACGTGCGTTTTC
TTCCTTGTT
Conservation Information
Conserved circRNAs NA
PMCS 1.034529411
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Wang et al., 2019