Plant Circular RNA Database

Detail information of AT5G65685_circ_g.2

			
						 General Information
					
						CircRNA Name
						AT5G65685_circ_g.2
					
						ID in PlantcircBase
						ath_circ_046010
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 26273434-26274705  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							AT5G65685						
					
						Parent gene annotation
						
							UDP-Glycosyltransferase superfamily protein
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT5G65685_circ_g.1 AT5G65685_circ_g.3 AT5G65685_circ_g.4 AT5G65685_circ_g.5 AT5G65685_circ_g.6 AT5G65685_circ_g.7 AT5G65685_circ_g.8 AT5G65685_circ_g.9 AT5G65685_circ_g.10 AT5G65685_circ_g.11 AT5G65685_circ_g.12 AT5G65685_circ_g.13 AT5G65685_circ_g.14 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G65685.11:7
AT5G65685.9:7
AT5G65685.2:7
AT5G65685.12:7
AT5G65685.6:7
AT5G65685.8:7
AT5G65685.3:7
AT5G65685.5:7
AT5G65685.7:7
AT5G65685.10:7
AT5G65685.1:7
AT5G65685.4:7

General Information
CircRNA Name	AT5G65685_circ_g.2
ID in PlantcircBase	ath_circ_046010
Alias	NA
Organism	Arabidpsis thaliana
Position	chr5: 26273434-26274705 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	AT5G65685
Parent gene annotation	UDP-Glycosyltransferase superfamily protein
Parent gene strand	-
Alternative splicing	AT5G65685_circ_g.1 AT5G65685_circ_g.3 AT5G65685_circ_g.4 AT5G65685_circ_g.5 AT5G65685_circ_g.6 AT5G65685_circ_g.7 AT5G65685_circ_g.8 AT5G65685_circ_g.9 AT5G65685_circ_g.10 AT5G65685_circ_g.11 AT5G65685_circ_g.12 AT5G65685_circ_g.13 AT5G65685_circ_g.14
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G65685.11:7 AT5G65685.9:7 AT5G65685.2:7 AT5G65685.12:7 AT5G65685.6:7 AT5G65685.8:7 AT5G65685.3:7 AT5G65685.5:7 AT5G65685.7:7 AT5G65685.10:7 AT5G65685.1:7 AT5G65685.4:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							TTGGAGTGCACAAGACAATCCTGTTATATATGAGGCCAAAGGTCCAACAGAAACTAATGGAGCC
ATTTCGGTGCAAATATGAATCACATGGAGACCATTCttgtggatagctaaagttggttcgagac
cagggattgagctatgtgaggatgacattattacaactttgttggagtagacaacaccgcccta
agtaaaga

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TTGTGGATAGCTAAAGTTGGTTCGAGACCAGGGATTGAGCTATGTGAGGATGACATTATTACAA
CTTTGTTGGAGTAGACAACACCGCCCTAAGTAAAGAAATGTGAGAACAAGAATATGTAACTTGG
AGATAATTCTTGTGTGTTATTGTCTTCCACTTACCTTCAAAATATTAACAAAATGTGGATTTGT
GTTATCTTGTAAGCGATCAAGACGGTGAAGTTCAGCTGGATCGAGCCCACATAGCTCCAATTTT
TCAGGAGGTACAAGACCCTAAAAAGCACAAGCACAAGAAGTTCTTTGTCAATTTTGCCAATGTA
GACTGTAGAGTGTATAAAGTAGTATAAAGGGAAAAAGCAAAGTGGCATGCCTTGTCAAAGTCTT
GGCATGTCAAGAGTATTCTAGTACCTTCAAGTCCCTACAAAGTTTGCAAAGAGATGGCAATAAG
AAAACTATGAGGTGAACAAACGCTGAAAGTTTGAAGAGGTGTTTTACCTGATTAACAAAAACAT
CCCAAAACAACGGTCCAACTATTGCAGTTTGCCAGTTGTGAATGTGTAAAACATCAGGCTGCTT
TCCAGATTTTGCAATGTAATCCAATGAAGCACGAGAGAAGTATGCAAATCTGATTTTGTTCTCA
GATAACACATATAAACCAAACCAGTCTGAAAACAAATGTAGATTCAAGCTCAACTATATCAAAT
TGAAGTACTGACCTATCAAAATCGTCCTGATACCCGTATACTTTATCACGGCTAAACATTGACG
AGTAATACACTGGTTGAATAAGTGTCACTCCTATTCCAGAGACAACTCTGCATAAACAAGGTTC
TCTTTGCCTTAAATTTAGGAAGAAATGGAATGTTTTGACAATATTTTACCAATTCTTCTTTTAC
AAACACTGAAAAATATCAACATTATAAGAAGAATAACTTGCAACAGCTCACTCACCCGTTCCAT
ATTCGGTTTGCATGCAGCTGGCCATCAAAATAAGAATATGCATCGGCTTCGATTTCACGAAGCC
CTTCAATTTCGTCCAAATCAAGTGTAGAATATCTGTTAATGAATATAGTTAATAAGACTCTACT
TCACAGTTGATATTATAAAGTATATTTTTCTGAAGGATTTGACTCATACTTTGGCAATATAACT
TCAACCATGTAACCCTCTTCTTGGAGTGCACAAGACAATCCTGTTATATATGAGGCCAAAGGTC
CAACAGAAACTAATGGAGCCATTTCGGTGCAAATATGAATCACATGGAGACCATTC

Sequences
Splice junction sequence	TTGGAGTGCACAAGACAATCCTGTTATATATGAGGCCAAAGGTCCAACAGAAACTAATGGAGCC ATTTCGGTGCAAATATGAATCACATGGAGACCATTCttgtggatagctaaagttggttcgagac cagggattgagctatgtgaggatgacattattacaactttgttggagtagacaacaccgcccta agtaaaga
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TTGTGGATAGCTAAAGTTGGTTCGAGACCAGGGATTGAGCTATGTGAGGATGACATTATTACAA CTTTGTTGGAGTAGACAACACCGCCCTAAGTAAAGAAATGTGAGAACAAGAATATGTAACTTGG AGATAATTCTTGTGTGTTATTGTCTTCCACTTACCTTCAAAATATTAACAAAATGTGGATTTGT GTTATCTTGTAAGCGATCAAGACGGTGAAGTTCAGCTGGATCGAGCCCACATAGCTCCAATTTT TCAGGAGGTACAAGACCCTAAAAAGCACAAGCACAAGAAGTTCTTTGTCAATTTTGCCAATGTA GACTGTAGAGTGTATAAAGTAGTATAAAGGGAAAAAGCAAAGTGGCATGCCTTGTCAAAGTCTT GGCATGTCAAGAGTATTCTAGTACCTTCAAGTCCCTACAAAGTTTGCAAAGAGATGGCAATAAG AAAACTATGAGGTGAACAAACGCTGAAAGTTTGAAGAGGTGTTTTACCTGATTAACAAAAACAT CCCAAAACAACGGTCCAACTATTGCAGTTTGCCAGTTGTGAATGTGTAAAACATCAGGCTGCTT TCCAGATTTTGCAATGTAATCCAATGAAGCACGAGAGAAGTATGCAAATCTGATTTTGTTCTCA GATAACACATATAAACCAAACCAGTCTGAAAACAAATGTAGATTCAAGCTCAACTATATCAAAT TGAAGTACTGACCTATCAAAATCGTCCTGATACCCGTATACTTTATCACGGCTAAACATTGACG AGTAATACACTGGTTGAATAAGTGTCACTCCTATTCCAGAGACAACTCTGCATAAACAAGGTTC TCTTTGCCTTAAATTTAGGAAGAAATGGAATGTTTTGACAATATTTTACCAATTCTTCTTTTAC AAACACTGAAAAATATCAACATTATAAGAAGAATAACTTGCAACAGCTCACTCACCCGTTCCAT ATTCGGTTTGCATGCAGCTGGCCATCAAAATAAGAATATGCATCGGCTTCGATTTCACGAAGCC CTTCAATTTCGTCCAAATCAAGTGTAGAATATCTGTTAATGAATATAGTTAATAAGACTCTACT TCACAGTTGATATTATAAAGTATATTTTTCTGAAGGATTTGACTCATACTTTGGCAATATAACT TCAACCATGTAACCCTCTTCTTGGAGTGCACAAGACAATCCTGTTATATATGAGGCCAAAGGTC CAACAGAAACTAATGGAGCCATTTCGGTGCAAATATGAATCACATGGAGACCATTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.168905871

Conservation Information
Conserved circRNAs	NA
PMCS	0.168905871

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							26274672-26273436(-)
						
						Potential amino acid sequence
						
							MAPLVSVGPLASYITGLSCALQEEGYMVEVILPKYSTLDLDEIEGLREIEADAYSYFDGQLHAN
RIWNGVVSGIGVTLIQPVYYSSMFSRDKVYGYQDDFDRFAYFSRASLDYIAKSGKQPDVLHIHN
WQTAIVGPLFWDVFVNQGLEGTRILLTCQDFDKGLVPPEKLELCGLDPAELHRLDRLQDNTNPH
FVNILKGGVVYSNKVVIMSSSHSSIPGLEPTLAIHKNGLHVIHICTEMAPLVSVGPLASYITGL
SCALQEEGYMVEVILPKYSTLDLDEIEGLREIEADAYSYFDGQLHANRIWNGVVSGIGVTLIQP
VYYSSMFSRDKVYGYQDDFDRFAYFSRASLDYIAKSGKQPDVLHIHNWQTAIVGPLFWDVFVNQ
GLEGTRILLTCQDFDKGLVPPEKLELCGLDPAELHRLDRLQDNTNPHFVNILKGGVVYSNKVVI
MSSSHSSIPGLEPTLAIHKNGLHVIHICTEMAPLVSVGPLASYITGLSCALQEEGYMVEVILPK
YSTLDLDEIEGLREIEADAYSYFDGQLHANRIWNGVVSGIGVTLIQPVYYSSMFSRDKVYGYQD
DFDRFAYFSRASLDYIAKSGKQPDVLHIHNWQTAIVGPLFWDVFVNQGLEGTRILLTCQDFDKG
LVPPEKLELCGLDPAELHRLDRLQDNTNPHFVNILKGGVVYSNKVVIMSSSHSSIPGLEPTLAI
HKNGLHVIHICTEMAPLVSVGPLASYITGLSCALQEEGYMVEVILPKYSTLDLDEIEGLREIEA
DAYSYFDGQLHANRIWNGVVSGIGVTLIQPVYYSSMFSRDKVYGYQDDFDRFAYFSRASLDYIA
KSGKQPDVLHIHNWQTAIVGPLFWDVFVNQGLEGTRILLTCQDFDKGLVPPEKLELCGLDPAEL
HRLDRLQDNTNPHFVNILKGGVVYSNKVVIMSSSHSSIPGLEPTLAIH(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	26274672-26273436(-)
Potential amino acid sequence	MAPLVSVGPLASYITGLSCALQEEGYMVEVILPKYSTLDLDEIEGLREIEADAYSYFDGQLHAN RIWNGVVSGIGVTLIQPVYYSSMFSRDKVYGYQDDFDRFAYFSRASLDYIAKSGKQPDVLHIHN WQTAIVGPLFWDVFVNQGLEGTRILLTCQDFDKGLVPPEKLELCGLDPAELHRLDRLQDNTNPH FVNILKGGVVYSNKVVIMSSSHSSIPGLEPTLAIHKNGLHVIHICTEMAPLVSVGPLASYITGL SCALQEEGYMVEVILPKYSTLDLDEIEGLREIEADAYSYFDGQLHANRIWNGVVSGIGVTLIQP VYYSSMFSRDKVYGYQDDFDRFAYFSRASLDYIAKSGKQPDVLHIHNWQTAIVGPLFWDVFVNQ GLEGTRILLTCQDFDKGLVPPEKLELCGLDPAELHRLDRLQDNTNPHFVNILKGGVVYSNKVVI MSSSHSSIPGLEPTLAIHKNGLHVIHICTEMAPLVSVGPLASYITGLSCALQEEGYMVEVILPK YSTLDLDEIEGLREIEADAYSYFDGQLHANRIWNGVVSGIGVTLIQPVYYSSMFSRDKVYGYQD DFDRFAYFSRASLDYIAKSGKQPDVLHIHNWQTAIVGPLFWDVFVNQGLEGTRILLTCQDFDKG LVPPEKLELCGLDPAELHRLDRLQDNTNPHFVNILKGGVVYSNKVVIMSSSHSSIPGLEPTLAI HKNGLHVIHICTEMAPLVSVGPLASYITGLSCALQEEGYMVEVILPKYSTLDLDEIEGLREIEA DAYSYFDGQLHANRIWNGVVSGIGVTLIQPVYYSSMFSRDKVYGYQDDFDRFAYFSRASLDYIA KSGKQPDVLHIHNWQTAIVGPLFWDVFVNQGLEGTRILLTCQDFDKGLVPPEKLELCGLDPAEL HRLDRLQDNTNPHFVNILKGGVVYSNKVVIMSSSHSSIPGLEPTLAIH(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of AT5G65685_circ_g.2

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