Plant Circular RNA Database

Detail information of AT5G65685_circ_g.7

			
						 General Information
					
						CircRNA Name
						AT5G65685_circ_g.7
					
						ID in PlantcircBase
						ath_circ_046015
					
						Alias
						5:26274150-26275514
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 26274150-26275514  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT5G65685						
					
						Parent gene annotation
						
							UDP-Glycosyltransferase superfamily protein
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT5G65685_circ_g.1 AT5G65685_circ_g.2 AT5G65685_circ_g.3 AT5G65685_circ_g.4 AT5G65685_circ_g.5 AT5G65685_circ_g.6 AT5G65685_circ_g.8 AT5G65685_circ_g.9 AT5G65685_circ_g.10 AT5G65685_circ_g.11 AT5G65685_circ_g.12 AT5G65685_circ_g.13 AT5G65685_circ_g.14 						
					
						Support reads
						1/1/4/3/1
					
						Tissues
						seedling;root;flower
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G65685.4:6
AT5G65685.9:6
AT5G65685.10:6
AT5G65685.1:7
AT5G65685.11:7
AT5G65685.3:7
AT5G65685.12:7
AT5G65685.8:6
AT5G65685.5:7
AT5G65685.2:7
AT5G65685.7:6
AT5G65685.6:6

General Information
CircRNA Name	AT5G65685_circ_g.7
ID in PlantcircBase	ath_circ_046015
Alias	5:26274150-26275514
Organism	Arabidpsis thaliana
Position	chr5: 26274150-26275514 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT5G65685
Parent gene annotation	UDP-Glycosyltransferase superfamily protein
Parent gene strand	-
Alternative splicing	AT5G65685_circ_g.1 AT5G65685_circ_g.2 AT5G65685_circ_g.3 AT5G65685_circ_g.4 AT5G65685_circ_g.5 AT5G65685_circ_g.6 AT5G65685_circ_g.8 AT5G65685_circ_g.9 AT5G65685_circ_g.10 AT5G65685_circ_g.11 AT5G65685_circ_g.12 AT5G65685_circ_g.13 AT5G65685_circ_g.14
Support reads	1/1/4/3/1
Tissues	seedling;root;flower
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G65685.4:6 AT5G65685.9:6 AT5G65685.10:6 AT5G65685.1:7 AT5G65685.11:7 AT5G65685.3:7 AT5G65685.12:7 AT5G65685.8:6 AT5G65685.5:7 AT5G65685.2:7 AT5G65685.7:6 AT5G65685.6:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTAAACTAGTTACATTCTGCTAGAAAATCAGAGAAGATAGCAAACTTCAAACCAAAGAAGAGTA
ACCTGAGAATTGTCAAACTCTTCATGCCCTTCTGATctatcaaaatcgtcctgatacccgtata
ctttatcacggctaaacattgacgagtaatacactggttgaataagtgtcactcctattccaga
gacaactc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 707
Transcript exons: 26274150-26274248,26274385-26274489,26274571-26274705,26
274792-26274996,26275108-26275236,26275481-26275514
CTATCAAAATCGTCCTGATACCCGTATACTTTATCACGGCTAAACATTGACGAGTAATACACTG
GTTGAATAAGTGTCACTCCTATTCCAGAGACAACTCCGTTCCATATTCGGTTTGCATGCAGCTG
GCCATCAAAATAAGAATATGCATCGGCTTCGATTTCACGAAGCCCTTCAATTTCGTCCAAATCA
AGTGTAGAATATTTTGGCAATATAACTTCAACCATGTAACCCTCTTCTTGGAGTGCACAAGACA
ATCCTGTTATATATGAGGCCAAAGGTCCAACAGAAACTAATGGAGCCATTTCGGTGCAAATATG
AATCACATGGAGACCATTCCTTTTGCCTTTATTTGTGAACCGTCTAAGTTCTGCTAGAATTTCG
GCATCTCCTTGTTGCAGGACATCAAGAGGAAATACAGAGATGTTCGCTTCATGCTCTTTAACCA
GCTTTCTCATGGATGAAGCTTCTTCAATGTTAACTAGTCCATTGATAACCATAGAATCAATACG
GAGAAGCAACTCCCAGAATAGAGACGACTTATCTTTCTTGATTACAATCTGACTTTCTGCCTCC
AATTGGTTTATCCTCTCTAACAATTCCTCTTTATCTTTCTTTAGCTGTTCTAACTCGTCAACTG
CAGCTAGGCGTTGTTTGTTTAAGATCATTATATCTGAGAATTGTCAAACTCTTCATGCCCTTCT
GAT
Transcript length: 786
Transcript exons: 26274150-26274248,26274385-26274489,26274571-26274705,26
274792-26274996,26275108-26275236,26275329-26275407,2627
5481-26275514
CTATCAAAATCGTCCTGATACCCGTATACTTTATCACGGCTAAACATTGACGAGTAATACACTG
GTTGAATAAGTGTCACTCCTATTCCAGAGACAACTCCGTTCCATATTCGGTTTGCATGCAGCTG
GCCATCAAAATAAGAATATGCATCGGCTTCGATTTCACGAAGCCCTTCAATTTCGTCCAAATCA
AGTGTAGAATATTTTGGCAATATAACTTCAACCATGTAACCCTCTTCTTGGAGTGCACAAGACA
ATCCTGTTATATATGAGGCCAAAGGTCCAACAGAAACTAATGGAGCCATTTCGGTGCAAATATG
AATCACATGGAGACCATTCCTTTTGCCTTTATTTGTGAACCGTCTAAGTTCTGCTAGAATTTCG
GCATCTCCTTGTTGCAGGACATCAAGAGGAAATACAGAGATGTTCGCTTCATGCTCTTTAACCA
GCTTTCTCATGGATGAAGCTTCTTCAATGTTAACTAGTCCATTGATAACCATAGAATCAATACG
GAGAAGCAACTCCCAGAATAGAGACGACTTATCTTTCTTGATTACAATCTGACTTTCTGCCTCC
AATTGGTTTATCCTCTCTAACAATTCCTCTTTATCTTTCTTTAGCTGTTCTAACTCGTCAACTG
CAGCTAGGCGTTGTTTGTTTAAGATCATTATATTTTTTTGAGCTTCTCTAAAGAGGTTCCATAT
GTCCTTATGTTTTGCTTCTTTTGTAATAGAAGATTGTCCAAGACTTTTCTGAGAATTGTCAAAC
TCTTCATGCCCTTCTGAT
Transcript length: 859
Transcript exons: 26274150-26274248,26274385-26274489,26274571-26274705,26
274792-26274996,26275108-26275236,26275329-26275514
CTATCAAAATCGTCCTGATACCCGTATACTTTATCACGGCTAAACATTGACGAGTAATACACTG
GTTGAATAAGTGTCACTCCTATTCCAGAGACAACTCCGTTCCATATTCGGTTTGCATGCAGCTG
GCCATCAAAATAAGAATATGCATCGGCTTCGATTTCACGAAGCCCTTCAATTTCGTCCAAATCA
AGTGTAGAATATTTTGGCAATATAACTTCAACCATGTAACCCTCTTCTTGGAGTGCACAAGACA
ATCCTGTTATATATGAGGCCAAAGGTCCAACAGAAACTAATGGAGCCATTTCGGTGCAAATATG
AATCACATGGAGACCATTCCTTTTGCCTTTATTTGTGAACCGTCTAAGTTCTGCTAGAATTTCG
GCATCTCCTTGTTGCAGGACATCAAGAGGAAATACAGAGATGTTCGCTTCATGCTCTTTAACCA
GCTTTCTCATGGATGAAGCTTCTTCAATGTTAACTAGTCCATTGATAACCATAGAATCAATACG
GAGAAGCAACTCCCAGAATAGAGACGACTTATCTTTCTTGATTACAATCTGACTTTCTGCCTCC
AATTGGTTTATCCTCTCTAACAATTCCTCTTTATCTTTCTTTAGCTGTTCTAACTCGTCAACTG
CAGCTAGGCGTTGTTTGTTTAAGATCATTATATTTTTTTGAGCTTCTCTAAAGAGGTTCCATAT
GTCCTTATGTTTTGCTTCTTTTGTAATAGAAGATTGTCCAAGACTTTTCTGTGAACTAAACTAG
TTACATTCTGCTAGAAAATCAGAGAAGATAGCAAACTTCAAACCAAAGAAGAGTAACCTGAGAA
TTGTCAAACTCTTCATGCCCTTCTGAT
						
					

						Genomic sequence
						
							CTATCAAAATCGTCCTGATACCCGTATACTTTATCACGGCTAAACATTGACGAGTAATACACTG
GTTGAATAAGTGTCACTCCTATTCCAGAGACAACTCTGCATAAACAAGGTTCTCTTTGCCTTAA
ATTTAGGAAGAAATGGAATGTTTTGACAATATTTTACCAATTCTTCTTTTACAAACACTGAAAA
ATATCAACATTATAAGAAGAATAACTTGCAACAGCTCACTCACCCGTTCCATATTCGGTTTGCA
TGCAGCTGGCCATCAAAATAAGAATATGCATCGGCTTCGATTTCACGAAGCCCTTCAATTTCGT
CCAAATCAAGTGTAGAATATCTGTTAATGAATATAGTTAATAAGACTCTACTTCACAGTTGATA
TTATAAAGTATATTTTTCTGAAGGATTTGACTCATACTTTGGCAATATAACTTCAACCATGTAA
CCCTCTTCTTGGAGTGCACAAGACAATCCTGTTATATATGAGGCCAAAGGTCCAACAGAAACTA
ATGGAGCCATTTCGGTGCAAATATGAATCACATGGAGACCATTCCTGGAATCAATTGACAAATA
CAAGTCAAAACATAAATTAAAAAAATGTGAAATAAGCTTGAAGATAAAGTCCACTAGAATTTTC
ACCTTTTGCCTTTATTTGTGAACCGTCTAAGTTCTGCTAGAATTTCGGCATCTCCTTGTTGCAG
GACATCAAGAGGAAATACAGAGATGTTCGCTTCATGCTCTTTAACCAGCTTTCTCATGGATGAA
GCTTCTTCAATGTTAACTAGTCCATTGATAACCATAGAATCAATACGGAGAAGCAACTCCCAGA
ATAGAGACGACTTATCTGCTTATAACATGGTACAAGATAAGCTTCAGGGTTCAAAAGACTAGTA
TCACATCGCTCACTTGAATACAAATCATCAAAAACTATAGAGACTATTCAAAAAAATGAGACCT
TTCTTGATTACAATCTGACTTTCTGCCTCCAATTGGTTTATCCTCTCTAACAATTCCTCTTTAT
CTTTCTTTAGCTGTTCTAACTCGTCAACTGCAGCTAGGCGTTGTTTGTTTAAGATCATTATATC
TAATCACACAACAAAGACGACACAATCCAATCGGGTGAGTTAACTTTCAGAATATGAAACCGAA
ACAAATAGCAACCAATTTTGTTTTTACTTTTTTGAGCTTCTCTAAAGAGGTTCCATATGTCCTT
ATGTTTTGCTTCTTTTGTAATAGAAGATTGTCCAAGACTTTTCTGTGAACTAAACTAGTTACAT
TCTGCTAGAAAATCAGAGAAGATAGCAAACTTCAAACCAAAGAAGAGTAACCTGAGAATTGTCA
AACTCTTCATGCCCTTCTGAT
						
					

			
		

Sequences
Splice junction sequence	CTAAACTAGTTACATTCTGCTAGAAAATCAGAGAAGATAGCAAACTTCAAACCAAAGAAGAGTA ACCTGAGAATTGTCAAACTCTTCATGCCCTTCTGATctatcaaaatcgtcctgatacccgtata ctttatcacggctaaacattgacgagtaatacactggttgaataagtgtcactcctattccaga gacaactc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 707 Transcript exons: 26274150-26274248,26274385-26274489,26274571-26274705,26 274792-26274996,26275108-26275236,26275481-26275514 CTATCAAAATCGTCCTGATACCCGTATACTTTATCACGGCTAAACATTGACGAGTAATACACTG GTTGAATAAGTGTCACTCCTATTCCAGAGACAACTCCGTTCCATATTCGGTTTGCATGCAGCTG GCCATCAAAATAAGAATATGCATCGGCTTCGATTTCACGAAGCCCTTCAATTTCGTCCAAATCA AGTGTAGAATATTTTGGCAATATAACTTCAACCATGTAACCCTCTTCTTGGAGTGCACAAGACA ATCCTGTTATATATGAGGCCAAAGGTCCAACAGAAACTAATGGAGCCATTTCGGTGCAAATATG AATCACATGGAGACCATTCCTTTTGCCTTTATTTGTGAACCGTCTAAGTTCTGCTAGAATTTCG GCATCTCCTTGTTGCAGGACATCAAGAGGAAATACAGAGATGTTCGCTTCATGCTCTTTAACCA GCTTTCTCATGGATGAAGCTTCTTCAATGTTAACTAGTCCATTGATAACCATAGAATCAATACG GAGAAGCAACTCCCAGAATAGAGACGACTTATCTTTCTTGATTACAATCTGACTTTCTGCCTCC AATTGGTTTATCCTCTCTAACAATTCCTCTTTATCTTTCTTTAGCTGTTCTAACTCGTCAACTG CAGCTAGGCGTTGTTTGTTTAAGATCATTATATCTGAGAATTGTCAAACTCTTCATGCCCTTCT GAT Transcript length: 786 Transcript exons: 26274150-26274248,26274385-26274489,26274571-26274705,26 274792-26274996,26275108-26275236,26275329-26275407,2627 5481-26275514 CTATCAAAATCGTCCTGATACCCGTATACTTTATCACGGCTAAACATTGACGAGTAATACACTG GTTGAATAAGTGTCACTCCTATTCCAGAGACAACTCCGTTCCATATTCGGTTTGCATGCAGCTG GCCATCAAAATAAGAATATGCATCGGCTTCGATTTCACGAAGCCCTTCAATTTCGTCCAAATCA AGTGTAGAATATTTTGGCAATATAACTTCAACCATGTAACCCTCTTCTTGGAGTGCACAAGACA ATCCTGTTATATATGAGGCCAAAGGTCCAACAGAAACTAATGGAGCCATTTCGGTGCAAATATG AATCACATGGAGACCATTCCTTTTGCCTTTATTTGTGAACCGTCTAAGTTCTGCTAGAATTTCG GCATCTCCTTGTTGCAGGACATCAAGAGGAAATACAGAGATGTTCGCTTCATGCTCTTTAACCA GCTTTCTCATGGATGAAGCTTCTTCAATGTTAACTAGTCCATTGATAACCATAGAATCAATACG GAGAAGCAACTCCCAGAATAGAGACGACTTATCTTTCTTGATTACAATCTGACTTTCTGCCTCC AATTGGTTTATCCTCTCTAACAATTCCTCTTTATCTTTCTTTAGCTGTTCTAACTCGTCAACTG CAGCTAGGCGTTGTTTGTTTAAGATCATTATATTTTTTTGAGCTTCTCTAAAGAGGTTCCATAT GTCCTTATGTTTTGCTTCTTTTGTAATAGAAGATTGTCCAAGACTTTTCTGAGAATTGTCAAAC TCTTCATGCCCTTCTGAT Transcript length: 859 Transcript exons: 26274150-26274248,26274385-26274489,26274571-26274705,26 274792-26274996,26275108-26275236,26275329-26275514 CTATCAAAATCGTCCTGATACCCGTATACTTTATCACGGCTAAACATTGACGAGTAATACACTG GTTGAATAAGTGTCACTCCTATTCCAGAGACAACTCCGTTCCATATTCGGTTTGCATGCAGCTG GCCATCAAAATAAGAATATGCATCGGCTTCGATTTCACGAAGCCCTTCAATTTCGTCCAAATCA AGTGTAGAATATTTTGGCAATATAACTTCAACCATGTAACCCTCTTCTTGGAGTGCACAAGACA ATCCTGTTATATATGAGGCCAAAGGTCCAACAGAAACTAATGGAGCCATTTCGGTGCAAATATG AATCACATGGAGACCATTCCTTTTGCCTTTATTTGTGAACCGTCTAAGTTCTGCTAGAATTTCG GCATCTCCTTGTTGCAGGACATCAAGAGGAAATACAGAGATGTTCGCTTCATGCTCTTTAACCA GCTTTCTCATGGATGAAGCTTCTTCAATGTTAACTAGTCCATTGATAACCATAGAATCAATACG GAGAAGCAACTCCCAGAATAGAGACGACTTATCTTTCTTGATTACAATCTGACTTTCTGCCTCC AATTGGTTTATCCTCTCTAACAATTCCTCTTTATCTTTCTTTAGCTGTTCTAACTCGTCAACTG CAGCTAGGCGTTGTTTGTTTAAGATCATTATATTTTTTTGAGCTTCTCTAAAGAGGTTCCATAT GTCCTTATGTTTTGCTTCTTTTGTAATAGAAGATTGTCCAAGACTTTTCTGTGAACTAAACTAG TTACATTCTGCTAGAAAATCAGAGAAGATAGCAAACTTCAAACCAAAGAAGAGTAACCTGAGAA TTGTCAAACTCTTCATGCCCTTCTGAT
Genomic sequence	CTATCAAAATCGTCCTGATACCCGTATACTTTATCACGGCTAAACATTGACGAGTAATACACTG GTTGAATAAGTGTCACTCCTATTCCAGAGACAACTCTGCATAAACAAGGTTCTCTTTGCCTTAA ATTTAGGAAGAAATGGAATGTTTTGACAATATTTTACCAATTCTTCTTTTACAAACACTGAAAA ATATCAACATTATAAGAAGAATAACTTGCAACAGCTCACTCACCCGTTCCATATTCGGTTTGCA TGCAGCTGGCCATCAAAATAAGAATATGCATCGGCTTCGATTTCACGAAGCCCTTCAATTTCGT CCAAATCAAGTGTAGAATATCTGTTAATGAATATAGTTAATAAGACTCTACTTCACAGTTGATA TTATAAAGTATATTTTTCTGAAGGATTTGACTCATACTTTGGCAATATAACTTCAACCATGTAA CCCTCTTCTTGGAGTGCACAAGACAATCCTGTTATATATGAGGCCAAAGGTCCAACAGAAACTA ATGGAGCCATTTCGGTGCAAATATGAATCACATGGAGACCATTCCTGGAATCAATTGACAAATA CAAGTCAAAACATAAATTAAAAAAATGTGAAATAAGCTTGAAGATAAAGTCCACTAGAATTTTC ACCTTTTGCCTTTATTTGTGAACCGTCTAAGTTCTGCTAGAATTTCGGCATCTCCTTGTTGCAG GACATCAAGAGGAAATACAGAGATGTTCGCTTCATGCTCTTTAACCAGCTTTCTCATGGATGAA GCTTCTTCAATGTTAACTAGTCCATTGATAACCATAGAATCAATACGGAGAAGCAACTCCCAGA ATAGAGACGACTTATCTGCTTATAACATGGTACAAGATAAGCTTCAGGGTTCAAAAGACTAGTA TCACATCGCTCACTTGAATACAAATCATCAAAAACTATAGAGACTATTCAAAAAAATGAGACCT TTCTTGATTACAATCTGACTTTCTGCCTCCAATTGGTTTATCCTCTCTAACAATTCCTCTTTAT CTTTCTTTAGCTGTTCTAACTCGTCAACTGCAGCTAGGCGTTGTTTGTTTAAGATCATTATATC TAATCACACAACAAAGACGACACAATCCAATCGGGTGAGTTAACTTTCAGAATATGAAACCGAA ACAAATAGCAACCAATTTTGTTTTTACTTTTTTGAGCTTCTCTAAAGAGGTTCCATATGTCCTT ATGTTTTGCTTCTTTTGTAATAGAAGATTGTCCAAGACTTTTCTGTGAACTAAACTAGTTACAT TCTGCTAGAAAATCAGAGAAGATAGCAAACTTCAAACCAAAGAAGAGTAACCTGAGAATTGTCA AACTCTTCATGCCCTTCTGAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.210844683

Conservation Information
Conserved circRNAs	NA
PMCS	0.210844683

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT5G65685_circ_g.7

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