Detail information of BGIOSGA026109_circ_igg.1


General Information
CircRNA Name BGIOSGA026109_circ_igg.1
ID in PlantcircBase osi_circ_017331
Alias Chr07:25495697_25500613(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr7: 23100554-23105470  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA026109_circ_igg.2 BGIOSGA026110_circ_ig.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGGAACAGTCCTTCAAGAAGCTTGAGTTTTTCTCATTTGTCAAGGTTGAGAGGCAGAGTTCAT
ACCTTGTGGGAATGGGTTCTTCGGAAATGGCCTTCGggattgtattatcatttaccaaagcgag
cagctggcattcgttatgtattcattgggaagccattgaatcagaggcccaggtactctctgtt
tctctgct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGATTGTATTATCATTTACCAAAGCGAGCAGCTGGCATTCGTTATGTATTCATTGGGAAGCCAT
TGAATCAGAGGCCCAGGTACTCTCTGTTTCTCTGCTCATCTACTGTTTATACTACATGAAACAA
ATCATACAAACAATGGGCTATGAAACACCAGTAATAAATGAGTTTGAGAATGCTGATAATAAGT
CTTTTCATGATCTGTAGTTTTTTTGGACATCTTCACATGTATTACCTCCATTTGAGAGCTTAAA
ATTCTCCAGCAGGTCACATTTAACTCATTGGATTTTGCAGGTATCAAATCTTGGGTATTTTTCT
GTTAATTCAGTTATGTATTCTTGGTGCTGAAAGACTTCGAAGAAGTAATTTATCAACAATAGCT
AGTTCGATTAACCAAATCTCATCTGGAGGCTATCCTTCATCAAGAGGTGGTACACTCTTTTTCT
CAATTTATGAAACCAGTTTTGGTTCTATGTTAATGCTTTGTGTTTACTTGTTTCATGGATATAA
ATAAATGTTCCAATATTACCTTTGTGAATGGCAAAACAGGTCGAGGTGTCCCTGTTCTAAATGA
AGATGGAAATATAATCAGCGACATCCGCCATGGGAAAACTGCAGATTTGGCTACTAGTTCAGAG
GTTTTTTTTTCTAGATAAATTCATTGAGATGACTACTATTGTGTAGCACAAAATGTTTAGCTTT
GTGTTGGACGCCAACAGCTTTTAAGATTATTGGTATCAAGCACTTCATGTTATGCAACAGAATT
CTATTTAAAAAAGAAAGCAACAAAGTAAAAAAAATGTTACAATTTAAGATTATGATTGAACTGA
AAATGCTTTTTTACCACTATTCTTATATTGTTTATATTATTTGATGTATTTTGTGTATGAATAT
AATTCTTCTTTCATATTGTATGTCTAATGTTCAGGCATCCAGTGGTAAGAGCAAATGCACCCTT
TGTCTCAGTACCCGTCAGAATCCCACTGCCACAACCTGTGGCCATGTCTTCTGCTGGTAAGACT
CGTTTTTTGGCCTTTACGGATGCAGCCTGAAATTTTTCTCTCATGCACTCACTTGAATGGTATG
GTAATTCATGACATAACATGCAGGAGTTGCATTATGGAGTGGTGTAATGAGAAGCCTGAATGCC
CCCTATGCAGAACTCCGATTACACATTCGAGTTTGATTTGTATATATCATTCAGATTTCTAGCA
AATGATTACTAGCAAGGGGTCATATCATTCTCCAGTGGATTCATTAAAATGATACTGAATCCCC
ACATTTTGGCGAGAACTCTTCTTCTGAAGTGTTTTAGTGTACCAAAAGAGGAGAGTAGAAACCA
TCCAATGAGGCTGAAGATCAATGCTGCCATTCAACTGTATTGTAGAGCTCAAATAACAAAACAA
TCAAACAGAACAAAATTTTCATTAGAGCTCAAACGGATACCCATGTATATGTACATTGTGGACA
CAACTTGATTTTGTAGGGTAGAACAGTGGCTGACTGGAATCATTATAGCAAAATGTATCGACCT
GAAATTCTGCCGGGAAATTTAACTATTTGCCAATATTAGATTCGACAATTATTCAAATGCCCCT
CTTAGATTTAGACTTAATTTTTTGCCCCTCTTAAGAGATGCCTTCTTAACTATTTGCCACTTTT
GTCCACGTGGTATGCCAATGTGGCAACACAGGGTAGAAATCGGTGTGGGACCCACTAGTCAGCC
TCTTCTCTATCCTTCTTCTTTCCCTCCGGTCCGGCGAGGAGCGTGCTCTGCCACAAGCCGGTGC
TGCTCCGGTCTCCATCCTTGTGCGCGGCTGCTCTAATCCACCGCCGCTTTGCCTTCGTCAGTGC
CACCGCTTCACCTCCTTCGACAGCGCCGCCGCTTTGCCTCCTCCACCACTGCGAGGAGCCCGTC
CGCCACCGCTACACATCCTCCTCCGCCCGCACCGTTGCTCCGCCTCCTCCACTTCCACAAGGAG
CCCGTCCGCGTCACTATGCCAGCGCCGCCGCTTCGCCTCTTCCACCACCACGAGTAACCCGTCC
GCCGCCGCTACACATCCTCCTTCGCTGGCGTCGCCGCTCCGTCTCGTCCACCTCCGCAAGGAGC
CCATCCGCTGTCGCTACGCCTCCTCCGCCGGTGCCGCCGCTCCGCCTCCTCCACCACCACGAGG
ATGTCCGCCATCGCTGCATCTCCTCCGCCGCCACTGCTCCTTTCCCCAACCGCGCCGTCATCGC
ACGCCGGACCGGAGGGAAAGAAGGAGGAGAGAGAGGAGAGGCTGACTTGTGGGTCCTACACCAA
TTTCTACCCTATGTTGCCACGTTGGCATGCCACGTGGGTAAAAGTGGCAAATAGTCAAGAATGC
ATCTCTTAAGAGGGAAAAAAAAAGTGCAAATCTAATAGAGGCATTTGAATAATTGTCGAATCTA
ATAGTGTCAAATAGTTAAATTTGCTTATCCCCGTATCCCTATGTATCACGTTCTTTGATTGCGT
TGCGTGACTGGCGTACGAGACATTTGCTTATCTCATACTCCCTCCGTCCTAAAAAAAAGACAAA
TCTTGGTTTTCGCGCCCAACGTTTGACCGTTCGTCTTATTTGAAAAAATTATAAAAAAATTAAA
AAGATAATTCATGCATAAAATATTAATCATGTTTTATCATCTAACAACAATAAAAGTATGAATT
ATAAAAAATTTCATATAAAACGGACAGTCAAAGTTGGATATGGAAACCTAGAATTTGTCTTTTT
TTAGACAGAGCAAGTACTCTACTGTGAGTTCTGCCCACACGCAGTCTGCAATTCTGGCATCTCT
GCAGAAACGCAATGCCTCTCCTCTCGCCTCGTCACTTTGAGCTCAGTAGAGTTGGAGTGTGGCA
AAGCAAAAGAGCGAAGCCGTTTGTCACAAGTGCCACCAACCCTCTCGTCTGGCGGCTGCCCAAC
AGAATCCACCATGGTTTCTCCATCCTTTTTCCATTTTCAATGCAATCCACCTCAAATTTCTCTC
TCCCGTAACGCCATCCATACCCCGGCATTGCTCTGCCCGTACACAAACTACCACACTAGTCGCA
AGTTAAAACCACTACAAAATCCATTCCAACTTGCCTCATCTCTCCCACCTCCATCACCAAACCA
GCACAGGTCGCTGTCTCTCTCCGAAATATCATTTCGTTTTTTAATCATATTTTCCTCCTCTTCG
CTAATCACCATGATTTGCCTCCGAGCCGCCTTCCCCTTGACCTCCTCCTTCTCCTCCTCCCCTC
TCCGCCGCCTCGCCCTCAAGCCCTCCTCCTCCCGCGCCGCCGCCGCCGCCGCCATGTCGTCCGC
CCCCGCCACCGCCATCGCCGCGCCGGTCGAGCACATCGTGCTCATCAAGGTCCGCCCCGAGGCG
GCGGCGTCGGGCGCCGCCGCGGCGATGGTGTCCTCGCTGCAGGCGCTGTCCAGCGTGGTGCCCG
GGCTGTCGTACATCCACGTCGGCCCCGTGCTCCGCCTCCGGTCGCCGGCGGCGGAGGCGCTGGG
GCCGACCCACGTCCTCCACTCCCGCTACGCCACCAAGCCCGACCTGGCGGCGTACGCGGCGCAC
CCGGCGCACGTCGCCGCCGTGCAGGGGCACGTCCTCCCCAACGCGCTCGACACCACCGCCATCG
ACTGGGTCAACGCCGCGCTCGCGCCGTCCCCGGTCACCCCGGGCTCCGCCGTGCGGCTCACGCT
GGCGAAGGTGAAGGAAGGTGTGGAGGTGCCCCAGCTCGTGGAGAAGGTCGCCGCGGCGACGGCG
GCGGCGGGCGAGGCGAAGGGCGCCAGGGTGAGCTTCGGGGAGAACTTCTCCCCCGCGCGGGCTA
AGGGGTACCAGTTCGGGATGGTGGCGGTGTTCGACAGCGTGGAGGAGCTCGACGCGGTGGAGGG
GGACGGGAAGGTGCAGGAGGCCAAGGCGGCGGTGAGGCCACTGCTCGACGAGGTGCTCGTGCTG
GACTTCGTCGTCGGACCTGCCGCCGTGGAGGCTCCGGCGCCGGCCAACCTCTGAGAGGTTTGCC
TTCGGTTTGGAAACTCTTAGTTGCCTTGTGATTGGGTGTGCTGCTGCTGCTGTGGCGTGTGTGA
TTGGCAATGGCAATTGATTTTGGAATGAATAAGAATTGTACCTGACTACCTGAACTAGGAATTA
GGATGGCCGCTCTTGCTTGGATCGTCGTGTACCAAACAAGAGCTTGCTGCCTTCAGTGTTCATC
TTTCTCTTGTCGCGCTGCCTACAAATGTGCATGTCAGATAGTCTTGTTAACCACAACTCGGTGC
TATGCCTCTCATGCCTCCCCATTAAGCATGAAGGAACCACTGACATGCCACTGGACAATCTTTT
AGTATCATGCACCCGTAGAAGTATTTTAGTCTTGCTACAATTCTGCCTTGTGAAATCCTCATAG
GCATGATTTATGGAACATGTGCCTTTGTGATTGTAGAGTATTATACGCAATAATCGCTGTTGTC
GGAATTGGATGTCCGGGTTACTACATTTTGAGCAGTTTTGATGACTTTGGCCATGTTAAAGTTG
AGGAGGTCAGTCCATTCAATAGTACAGAGGACCTTTTTTTAGTGGTAATAGTGATCTTGCTGAA
CGCATCAGGTTTGACAGTAATAGTTTTGGTCATTCATTCCTATTGAGATCGACTATCTTGCTGA
ATGAAACTGATTACATAATTTCTCATTGTGATTTTAACAGCTCTAGAATTGTTGCACGTGGTAT
TGCCCTCGATGACTCTCAGCTTGATGACCATTCTGAAAGTGATAGTTCTAGTATAGGCACTGCA
GCACAACCATCCCCAATTAGGAACAGTCCTTCAAGAAGCTTGAGTTTTTCTCATTTGTCAAGGT
TGAGAGGCAGAGTTCATACCTTGTGGGAATGGGTTCTTCGGAAATGGCCTTCG
Conservation Information
Conserved circRNAs osa_circ_034715
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021