Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA003620_circ_g.2 |
ID in PlantcircBase | osi_circ_002101 |
Alias | 1:19882587|19884526 |
Organism | Oryza sativa ssp. indica |
Position | chr1: 19882587-19884526 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA003620 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA003620_circ_g.1 BGIOSGA003620_circ_g.3 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA003620-TA:5 |
Conservation Information | |
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Conserved circRNAs | osa_circ_001889* |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
19883064-19884523(+) |
Potential amino acid sequence |
MDDLEMIQVIGKGSGGIVQLVRHKWVGTLYALKGIQMNIQEAVRKQIVQELKINQATQNPHIVL CHQSFYHNGVIYLVLEYMDRGSLADIIKQVKTILEPYLAVLCKQVLEGLLYLHHERHVIHRDIK PSNLLVNRKGEVKITDFGVSAVLASSMGQRDTFVGTYNYMAPERISGSSYDYKSDIWSLGLVIL ECAIGRFPYIPSEGEGWLSFYELLEAIVDQPPPSAPADQFSPEFCAFISSWTASGTFKDGELRL NQRGLQLISEETADEPQSTNLKVEDVQLSMDDLEMIQVIGKGSGGIVQLVRHKWVGTLYALKGI QMNIQEAVRKQIVQELKINQATQNPHIVLCHQSFYHNGVIYLVLEYMDRGSLADIIKQVKTILE PYLAVLCKQVLEGLLYLHHERHVIHRDIKPSNLLVNRKGEVKITDFGVSAVLASSMGQRDTFVG TYNYMAPERISGSSYDYKSDIWSLGLVILECAIGRFPYIPSEGEGWLSFYELLEAIVDQPPPSA PADQFSPEFCAFISSWTASGTFKDGELRLNQRGLQLISEETADEPQSTNLKVEDVQLSMDDLEM IQVIGKGSGGIVQLVRHKWVGTLYALKGIQMNIQEAVRKQIVQELKINQATQNPHIVLCHQSFY HNGVIYLVLEYMDRGSLADIIKQVKTILEPYLAVLCKQVLEGLLYLHHERHVIHRDIKPSNLLV NRKGEVKITDFGVSAVLASSMGQRDTFVGTYNYMAPERISGSSYDYKSDIWSLGLVILECAIGR FPYIPSEGEGWLSFYELLEAIVDQPPPSAPADQFSPEFCAFISSWTASGTFKDGELRLNQRGLQ LISEETADEPQSTNLKVEDVQLSMDDLEMIQVIGKGSGGIVQLVRHKWVGTLYALKGIQMNIQE AVRKQIVQELKINQATQNPHIVLCHQSFYHNGVIYLVLEYMDRGSLADIIKQVKTILEPYLAVL CKQVLEGLLYLHHERHVIHRDIKPSNLLVNRKGEVKITDFGVSAVLASSMGQRDTFVGTYNYMA PERISGSSYDYKSDIWSLGLVILECAIGRFPYIPSEGEGWLSFYELLEAIVDQPPPSAPADQFS PEFCAFISS(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |