Detail information of BGIOSGA003620_circ_g.2


General Information
CircRNA Name BGIOSGA003620_circ_g.2
ID in PlantcircBase osi_circ_002101
Alias 1:19882587|19884526
Organism Oryza sativa ssp. indica
Position chr1: 19882587-19884526  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA003620
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA003620_circ_g.1 BGIOSGA003620_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA003620-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAGCTTCTACGAATTATTAGAAGCAATTGTTGACCAGCCACCACCCTCTGCACCAGCGGACCA
GTTCTCTCCAGAATTTTGTGCATTTATCTCCTCCTGgaccgcgagtggtacattcaaggatggt
gaactgcggcttaatcaaagaggtttgcagcttatatccgaggaaactgcagatgaacctgtga
gttcctgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACCGCGAGTGGTACATTCAAGGATGGTGAACTGCGGCTTAATCAAAGAGGTTTGCAGCTTATA
TCCGAGGAAACTGCAGATGAACCTGTGAGTTCCTGGTGCCATGGCTACTTTTTTTGTTTGTTCA
TATCTCCCTACTGGGTTCATGTAAACTGCTTTATCGTACTCCTTATGGTGACATGTAGGTTAGT
GTAGAAGCACATGTACAGGTTGACTAGTTCAGTCAAACCTTATCATGCTTCTGTTGATTTTCAT
TTGGCTGATTGAATGCAATACTCACTTGCAATGCATGGGATCCATGCCACTCATGCATTCTCGC
AATGTATTATGTGCTGCAATAGTGCTAAGGAATCATTGTGTAAACATTTCAGAGTTTATCCATG
GATATAACATTGTTCACATTTCTCAATTTCTGTTTCATCTTTATGTCCTCCAGCAGTCAACAAA
CCTGAAGGTGGAAGATGTTCAGTTGTCAATGGATGACCTTGAGATGATTCAAGTCATTGGTAAG
GGGAGTGGTGGTATCGTCCAACTAGTTCGGCACAAGTGGGTGGGGACATTATATGCCTTGAAGG
TAATTTCCATTACACAAAATCCATCTAGTGTTCCACACTAACTCTTAAATGGAAAATGTATATC
TTGTGGCTGCATCAGGCTGCGAGTCCTTCAGTTGAACTGTTTCTCTATCTTTATGTTTGTAATC
ATGGAAAGCTGGAAGTCAATCTCTCAGTTCCATTTTGAACATGTTTATCATAATCAGATTATTC
TGCATCATAGCATTTGATTGATTTTTTAATCAATTTGGTAGTGTTGGCACCTATTAGTATGTTC
CCTGTTGAAATTAGGTGGGGCATTCTACATAAATGGTGTAGCAGAAGCATCTGTCGTCAGCTTA
CGTGTTGCATGCAATATCTACATTGAACTCTGATTTTCAATTAATATTGATGCTAATGAAGAAC
ATCATGTTATGATGTTCAGATCAATCAAGAATTCTGTGCATTGTCCCTGGTATTCATACTGCTG
TGGCATTTAATTAACTAGCATTGCAATTCTGTCCACAGGGCATTCAAATGAACATTCAAGAGGC
AGTTCGCAAACAAATAGTACAAGAGCTCAAAATAAATCAAGCAACACAGAACCCACATATAGTC
CTTTGCCACCAATCTTTCTACCATAATGGTGTAATATATCTCGTTCTAGAATACATGGACCGTG
GATCTCTTGCAGATATCATTAAACAAGTCAAAACAATTCTGGAGCCATACCTGGCAGTACTTTG
CAAACAGGTTAGCATAAACTTAGCCTTTTATTTCTAACTTTCCCTGTTTTCGGAATAAGCTTGG
AATTTTGTCGCATCTATCCAGTTGAAAAAGTATTCTAACGTAAAAAAACATTGCATAATATTTT
GACAACTCAGGTTTTGGAGGGTCTACTGTATCTTCATCATGAAAGGCATGTGATTCACAGGGAT
ATAAAGCCATCTAACTTGTTAGTTAACCGTAAAGGTGAAGTAAAGATTACCGATTTTGGGGTAA
GTGCGGTGCTAGCAAGTTCAATGGGTCAGCGGGATACGTTTGTTGGAACCTACAACTATATGGC
GGTATGTTGAAATAATGACCTGCTTTATTTATGTACCCCTTAGTCTATGTTCAAGACAGTGATC
TGATCTGGAATTCATAAATTTGTTCTCATAGTTTCTACCTTTCTTCCTAGTTCAGCCTGAGCGT
ATTAGTGGAAGCTCCTATGACTACAAGAGTGACATATGGAGTTTGGGCTTAGTAATACTCGAGT
GTGCCATTGGTCGGTTCCCCTATATACCTTCAGAAGGGGAAGGTTGGTTAAGCTTCTACGAATT
ATTAGAAGCAATTGTTGACCAGCCACCACCCTCTGCACCAGCGGACCAGTTCTCTCCAGAATTT
TGTGCATTTATCTCCTCCTG
Conservation Information
Conserved circRNAs osa_circ_001889*
PMCS
Functional Information
Coding potential Y
Potential coding position 19883064-19884523(+)
Potential amino acid sequence MDDLEMIQVIGKGSGGIVQLVRHKWVGTLYALKGIQMNIQEAVRKQIVQELKINQATQNPHIVL
CHQSFYHNGVIYLVLEYMDRGSLADIIKQVKTILEPYLAVLCKQVLEGLLYLHHERHVIHRDIK
PSNLLVNRKGEVKITDFGVSAVLASSMGQRDTFVGTYNYMAPERISGSSYDYKSDIWSLGLVIL
ECAIGRFPYIPSEGEGWLSFYELLEAIVDQPPPSAPADQFSPEFCAFISSWTASGTFKDGELRL
NQRGLQLISEETADEPQSTNLKVEDVQLSMDDLEMIQVIGKGSGGIVQLVRHKWVGTLYALKGI
QMNIQEAVRKQIVQELKINQATQNPHIVLCHQSFYHNGVIYLVLEYMDRGSLADIIKQVKTILE
PYLAVLCKQVLEGLLYLHHERHVIHRDIKPSNLLVNRKGEVKITDFGVSAVLASSMGQRDTFVG
TYNYMAPERISGSSYDYKSDIWSLGLVILECAIGRFPYIPSEGEGWLSFYELLEAIVDQPPPSA
PADQFSPEFCAFISSWTASGTFKDGELRLNQRGLQLISEETADEPQSTNLKVEDVQLSMDDLEM
IQVIGKGSGGIVQLVRHKWVGTLYALKGIQMNIQEAVRKQIVQELKINQATQNPHIVLCHQSFY
HNGVIYLVLEYMDRGSLADIIKQVKTILEPYLAVLCKQVLEGLLYLHHERHVIHRDIKPSNLLV
NRKGEVKITDFGVSAVLASSMGQRDTFVGTYNYMAPERISGSSYDYKSDIWSLGLVILECAIGR
FPYIPSEGEGWLSFYELLEAIVDQPPPSAPADQFSPEFCAFISSWTASGTFKDGELRLNQRGLQ
LISEETADEPQSTNLKVEDVQLSMDDLEMIQVIGKGSGGIVQLVRHKWVGTLYALKGIQMNIQE
AVRKQIVQELKINQATQNPHIVLCHQSFYHNGVIYLVLEYMDRGSLADIIKQVKTILEPYLAVL
CKQVLEGLLYLHHERHVIHRDIKPSNLLVNRKGEVKITDFGVSAVLASSMGQRDTFVGTYNYMA
PERISGSSYDYKSDIWSLGLVILECAIGRFPYIPSEGEGWLSFYELLEAIVDQPPPSAPADQFS
PEFCAFISS(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021