Detail information of BGIOSGA003620_circ_g.3


General Information
CircRNA Name BGIOSGA003620_circ_g.3
ID in PlantcircBase osi_circ_002102
Alias 1:19883024|19884526
Organism Oryza sativa ssp. indica
Position chr1: 19883024-19884526  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA003620
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA003620_circ_g.1 BGIOSGA003620_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA003620-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAGCTTCTACGAATTATTAGAAGCAATTGTTGACCAGCCACCACCCTCTGCACCAGCGGACCA
GTTCTCTCCAGAATTTTGTGCATTTATCTCCTCCTGcagtcaacaaacctgaaggtggaagatg
ttcagttgtcaatggatgaccttgagatgattcaagtcattggtaaggggagtggtggtatcgt
ccaactag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGTCAACAAACCTGAAGGTGGAAGATGTTCAGTTGTCAATGGATGACCTTGAGATGATTCAAG
TCATTGGTAAGGGGAGTGGTGGTATCGTCCAACTAGTTCGGCACAAGTGGGTGGGGACATTATA
TGCCTTGAAGGTAATTTCCATTACACAAAATCCATCTAGTGTTCCACACTAACTCTTAAATGGA
AAATGTATATCTTGTGGCTGCATCAGGCTGCGAGTCCTTCAGTTGAACTGTTTCTCTATCTTTA
TGTTTGTAATCATGGAAAGCTGGAAGTCAATCTCTCAGTTCCATTTTGAACATGTTTATCATAA
TCAGATTATTCTGCATCATAGCATTTGATTGATTTTTTAATCAATTTGGTAGTGTTGGCACCTA
TTAGTATGTTCCCTGTTGAAATTAGGTGGGGCATTCTACATAAATGGTGTAGCAGAAGCATCTG
TCGTCAGCTTACGTGTTGCATGCAATATCTACATTGAACTCTGATTTTCAATTAATATTGATGC
TAATGAAGAACATCATGTTATGATGTTCAGATCAATCAAGAATTCTGTGCATTGTCCCTGGTAT
TCATACTGCTGTGGCATTTAATTAACTAGCATTGCAATTCTGTCCACAGGGCATTCAAATGAAC
ATTCAAGAGGCAGTTCGCAAACAAATAGTACAAGAGCTCAAAATAAATCAAGCAACACAGAACC
CACATATAGTCCTTTGCCACCAATCTTTCTACCATAATGGTGTAATATATCTCGTTCTAGAATA
CATGGACCGTGGATCTCTTGCAGATATCATTAAACAAGTCAAAACAATTCTGGAGCCATACCTG
GCAGTACTTTGCAAACAGGTTAGCATAAACTTAGCCTTTTATTTCTAACTTTCCCTGTTTTCGG
AATAAGCTTGGAATTTTGTCGCATCTATCCAGTTGAAAAAGTATTCTAACGTAAAAAAACATTG
CATAATATTTTGACAACTCAGGTTTTGGAGGGTCTACTGTATCTTCATCATGAAAGGCATGTGA
TTCACAGGGATATAAAGCCATCTAACTTGTTAGTTAACCGTAAAGGTGAAGTAAAGATTACCGA
TTTTGGGGTAAGTGCGGTGCTAGCAAGTTCAATGGGTCAGCGGGATACGTTTGTTGGAACCTAC
AACTATATGGCGGTATGTTGAAATAATGACCTGCTTTATTTATGTACCCCTTAGTCTATGTTCA
AGACAGTGATCTGATCTGGAATTCATAAATTTGTTCTCATAGTTTCTACCTTTCTTCCTAGTTC
AGCCTGAGCGTATTAGTGGAAGCTCCTATGACTACAAGAGTGACATATGGAGTTTGGGCTTAGT
AATACTCGAGTGTGCCATTGGTCGGTTCCCCTATATACCTTCAGAAGGGGAAGGTTGGTTAAGC
TTCTACGAATTATTAGAAGCAATTGTTGACCAGCCACCACCCTCTGCACCAGCGGACCAGTTCT
CTCCAGAATTTTGTGCATTTATCTCCTCCTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 19883064-19883036(+)
Potential amino acid sequence MDDLEMIQVIGKGSGGIVQLVRHKWVGTLYALKGIQMNIQEAVRKQIVQELKINQATQNPHIVL
CHQSFYHNGVIYLVLEYMDRGSLADIIKQVKTILEPYLAVLCKQVLEGLLYLHHERHVIHRDIK
PSNLLVNRKGEVKITDFGVSAVLASSMGQRDTFVGTYNYMAPERISGSSYDYKSDIWSLGLVIL
ECAIGRFPYIPSEGEGWLSFYELLEAIVDQPPPSAPADQFSPEFCAFISSCSQQT*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021