Detail information of BGIOSGA037874_circ_igg.1


General Information
CircRNA Name BGIOSGA037874_circ_igg.1
ID in PlantcircBase osi_circ_003550
Alias 12:22977028|22981461
Organism Oryza sativa ssp. indica
Position chr12: 22977028-22981461  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA037874_circ_g.1 BGIOSGA037874_circ_g.2 BGIOSGA037874_circ_g.2 BGIOSGA037874_circ_g.3 BGIOSGA037874_circ_g.4 BGIOSGA037874_circ_g.5 BGIOSGA037874_circ_g.6 BGIOSGA037874_circ_g.7 BGIOSGA037874_circ_g.8
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACATCCTACAGTAACTTGTTATATTTTAGTCGGAGGGAAATGATATATACATATGAATGTACAT
GTGTATCCTCTTACTCGGGGAAATAATTGGCTTAAGaatgatccatgcgatgcgtatcaaagat
gggaaagctacctatgtgtcgagatatgtgaagacttctcgtctcaagcaagaagagtattttg
gtggagca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATGATCCATGCGATGCGTATCAAAGATGGGAAAGCTACCTATGTGTCGAGATATGTGAAGACT
TCTCGTCTCAAGCAAGAAGAGTATTTTGGTGGAGCAAAGTTTATGAAGGTAACTTCAATTGTTT
GATTAGACATTCTCATGTCTTTGCAATTAATCGATTGTTACTGTAGTATTTTCTTGACTACAGC
TCCAAAATGTATTCTGTTTAGCTTGTTGGCGAGTGTGACTTTTCTAGTTTGTACATAAGTTTCT
CAATTTAACTTAATCTTCAGATTTTTTGTAATCAGGCTATGCTTAGATCCAGGGGTGAAAAGTT
TTGGCGTCACATTGGATATACGGACACACATTTGAAGTATTAAACGTAGACTAATAACAAAACA
AATTATAGATTCCGCCTGTAAACTGCAAGACGAATTTATTATGCCTAATTAATCTGTCATTAGC
AAATGTTTACTCTAGCACCACATTGTCAAATCATGGAGCAATTAGGCTTAAAAGATTCGTTTCA
CAATTTACACGCAATCTGTGTAATTAGTTTTTTATTTTGTCTATATTTAATACTCCATGCATGT
GTCCAAACATTCGATGTGACAGGGTGAAAAGTTTTTGCATGGGAACTAAACAGGGCCTCAGTTT
ACTGCTGCTTCTTAGCGACATACCTTACCCAGCATGATTTTCTTCAGCATATTTTTGGTTCTCG
GTTTTCTCACAGATCTCTCTGTGCTTGCATGTTGGGTTGCAGTGTCGAATTTTTGTTGATTTCA
TATGCATATCAGCTTTGAACTTGTCGTATAGTCATAGGGACCTCACTTTATTTATGTCCTCTTA
GTTTCTTTGCTTCTACACTAACTGCCTGACTATATAGTTGACCTACGGTGACATCAATGTAACT
TCATGATCATCCTTAAATGTACCATTAGAAAATTCAAGTCCTGTTGATAACTACTTCTAAATCC
TAACTCTCCAGCTCTTTTATGGCCATTGACAATCAGTAATACATGCATGTGCTTTTTTTACCCG
ATTCTTACATTTTACAGATTGGAGACCTGAAGGGATTTTATGGATTGTTTATGGTCCAAATGCA
ACAACTCCGGAAAAAACTCAAAGTATTGGATTTTACATATGGACATGGGACAGGTTATTTTTAT
CTTACGCAGAACCTATTCAAATATCATGTTTAAATGCAGGACATTCTGCACTGCATGTTGTCAT
TTTTTTTCACGACCATTTGGTGTAACACCATTTTATTGATTTGGTGACTTTGTTTTTTCAGCTA
ATACTGCACTTATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTGTAA
GTTCTCATCCCATAATGGTAATGGCTAGTTGGGAAAGTTGTGACAAAACATGGATATAGCTAGA
CCCAGTGTGGTATTTTCACATCTAGCTTAAAACGTTAATACTACATTTTTCTATAGCCACTACA
CATGCCATTGGAAATTCAACAGCACGATCCTTTATTTTTGACAAACACGACCAGGTTGGCAGCT
TACTTTTGTGTAAATGGAAAATGGCAAAATCCCCCCCCCCCCCCAAAGCTAGGAGAAAATCTAC
CTGTTTCATCTCCAATATCATAAGAATAGCAAAGGAATCAATCACTTGAGATTTTTACAACAGT
ACAAAGCATTTCCAAATGATTATTGGCTTATGAGTATTGCATTGCACTATGCATGATTATCGTG
TCAGACTATCACAATATGTTATATGTGGTCGATTTCATATACCATCATAGGAAATTTATTTTGT
TTCTCATGAACAGTTCTGCATGCCAGCTGATTTTTATTTTAGATTTAGATCTATGTAAATTGTA
AAATAAATATTTTTGCAACTGTGAAACTCTGGTTTCTGCGTTCGTTTTCAGATGTTGTTAAGGT
CCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGGATTACGACAAACGGTTGAAACACTCT
TTCACTGCTCATCCAAAGGTCGATCCATTTACAGGTACACAACAGTAACTCATGTTATTTCTTG
CTTTCCCTATTGTTTATCGTAATTGTGTTAAAAGGTTTTATTTACCGGTCTTTCAGACGAAATG
TTCGCTTTTGGATATTCGCATGAACCTCCTTACTGTACATACCGGGTCATTACCAAGGATGGAG
CCATGCTTGATCCTGTGCCAATAACAATTCCAGAATCTGTAATGATGCACGACTTTGCCATTAC
AGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAGGTAAGTGGTGTTTTT
GCTTGTCTAGCAATTTGTGGCCAAGGTCATTGACAGACTTTTTTTTTCTGCCCCTTATTTTACT
ACGTCAATAAACAATCATAGTACGGTTTGCAGTGCTTTATTCTAACCGAAGAACATTGACCAAA
ACATAGGATACTGTTTCAGCATGTACAGATTGTTACTTGTTAATACACATACCTTTATAGTGGT
TTGCTGGTTTTAGAATCCTAAGGGAACATCCGTTGTTTTTTCTTAAGATTTCCATGATGAATAC
TCCATATGTATGCATTCCATTCAAGAATACCTAGTCAATATATGCTGCAGAGGGTAGCACTTGT
GTTCATTGAAGCATTTGATAAATGATATCAAAACCTCTTCATAATTTGACTCTTGCCCTGTCCC
ATCATTTTATAAGGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAA
GCTCGTTTTGGTATACTCCAACGTTATGAAAAGGATGACACAAACATCAGATGGTTTGAACTTC
CCAACTGCTTCATATTCCACAATGGTATGCCATTGGTAACCTTCTTGAACTTCACATGTACAAC
ATTTTGTACATTGGACATGATGATGAATAACTGTAACGACAAATTTGTCTTGGCCTTCCAAAGG
GTGCTTTGCTAGGAATGTGAGAACATAAAACCAAAAACATAGAGTTAAAAAAAGGGAACTAGAA
GATATCAGTATTTCATCTCATGCTGTTCTAAGTTATCTGCTCATTAGAATTCTCTCTTGTTACA
GCTAATGCTTGGGAAGAGGGTGACGAAGTTATCCTAATTACCTGCCGCTTGGAGAATCCTGACT
TGGACAAGGTGAACGGTTACCAAAGCGACAATCTCGAGAACTTTGGGAATGAGCTGTATGTACC
TACAATTCAGTCGCCATTTAAATTCCAAGAAATGAAATGCTTGACCCAGTGTTATATATATACT
TAGGTATGAGATGAGATTCAACATGAAAACCGGTGCTGCTTCACAAAAGCAACTATCTGTTTCT
GCTGTAGATTTTCCTCGAATTAATGAGAGCTGCACTGGCAGGTAACTTTTAGTGGAAGTCTCAA
CTTCAATAAGTAATGATTCTTCTCTAGGAAATCATGGGCAACCTGTTCATATCAGCTGCATTGT
TCATTTCTGTTTTGTCGGTGATTTGATGATGGCCATATATATATCAAGCACTATATACGAAAGT
CAGCATCATAGAGAACTTAGACTTGGCTGCTTCCTGAATCACTTGACTCACATGCTTCTAACGT
GCAAATTTGGTGAAAACAGAAAGCAGCGGTATGTGTATTGCGCTATTCTAAACAGCATAGCGAA
GGTAGCAGGCATTATAAAATTTGATCTACATGCTGAACCGGAGATCAGTGGCAAGAAACAACTT
GAAGTGGGGGGAAATGTGAGAGGAATATTTGACTTGGGACCTGGTAGATTCGGGTCCGAGGCAA
TTTTTGTGCCTAAGGAACCCGGTGTATCTGGAGAAGAAGATGATGGTTATTTGATATTCTTTGT
CCACGACGAGAATACAGGGTACTCATTATCTTTTCCTTCCTTACCAATTAACTGCTCCATGCGT
GTATGTTGTATGTTAGTTGCTGTAGTCTGATACAAAACATGCATGCCCATCTGTTGCTCTCCAA
TTTTTATAGTTTATACTATCAAATTTGTTTTGTGTCGTTGGTGTAGGAAATCTGAAGTCAATGT
GATTGATGCAAAGACAATGTCTGCTGACCCGGTGGCAGTTGTTGAGCTACCAAGCCGAGTTCCC
TACGGATTCCATGCTTTCTTTATAAACGAGGTACGAAAACCATTCGAATTGTATGTACCTATGT
AGATATATATAGAGAAGACTTTAAATTGTTTTGAGCTCATACACTTTCCGTTTTCTCTGGTCTT
CAATTTGGGCGATTCTATGTGAATATGAATATGATGTGATATGGTCAATTTGCCCTTTGACAGG
AACAACTGGCAAAACAATCAGCGTGACAAGTGATAGCGGACTGCATACATCCTACAGTAACTTG
TTATATTTTAGTCGGAGGGAAATGATATATACATATGAATGTACATGTGTATCCTCTTACTCGG
GGAAATAATTGGCTTAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021