Detail information of Os10g0494800_circ_g.5


General Information
CircRNA Name Os10g0494800_circ_g.5
ID in PlantcircBase osa_circ_007291
Alias Os_ciR4260
Organism Oryza sativa
Position chr10: 18803164-18803341  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os10g0494800
Parent gene annotation Similar to Katanin p80 WD40-containing subunit B1 (Katanin p80 s
ubunit B1) (p80 katanin). (Os10t0494800-01)
Parent gene strand -
Alternative splicing Os10g0494800_circ_g.3 Os10g0494800_circ_g.4
Support reads 6
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os10t0494800-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCCCATATTTTCATGTTAGTGTCTGAAGACCCAGAAGCGAAGAATTCTCCAAAAGGATGGAAA
TCAAGGGACGCACAACTCGATCTATacaatccaccggccatcaggagtgaatctaagcacatca
atccgccgtgtgtgacctttatatgtgtgaatgcatccctttttccgcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACAATCCACCGGCCATCAGGAGTGAATCTAAGCACATCAATCCGCCGTGTGTGACCTTTATATG
TGTGAATGCATCCCTTTTTCCGCATATCCCATATTTTCATGTTAGTGTCTGAAGACCCAGAAGC
GAAGAATTCTCCAAAAGGATGGAAATCAAGGGACGCACAACTCGATCTAT
Conservation Information
Conserved circRNAs NA
PMCS 0.458668727
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015