Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0494800_circ_g.3 |
ID in PlantcircBase | osa_circ_007289 |
Alias | NA |
Organism | Oryza sativa |
Position | chr10: 18802886-18803362 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os10g0494800 |
Parent gene annotation |
Similar to Katanin p80 WD40-containing subunit B1 (Katanin p80 s ubunit B1) (p80 katanin). (Os10t0494800-01) |
Parent gene strand | - |
Alternative splicing | Os10g0494800_circ_g.4 Os10g0494800_circ_g.5 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os10t0494800-01:2 |
Conservation Information | |
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Conserved circRNAs | osi_circ_008563 |
PMCS | 0.3765395 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
18803311-18802895(+) 18803234-18802911(+) 18802908-18803266(-) 18803269-18802888(-) |
Potential amino acid sequence |
MEIKGRTTRSMSSKSTNDCSQ*(+) MHPFFRISHIFMLVSEDPEAKNSPKGWKSRDAQLDLCPVKVRTTVANKNSWG*(+) MSSYWLQSFVLLLDIDRVVRPLISILLENSSLLGLQTLT*(-) MKIWDMRKKGCIHTYKGHTRRIDVLRFTPDGRWIVSGGSDNSVKIWDLTAGKLLHDFRNHEGPI NCLDFHPHEFLLATVVRTFTGHRSSCASLDFHPFGEFFASGSSDTNMKIWDMRKKGCIHTYKGH TRRIDVLRFTPDGRWIVSGGSDNSVKIWDLTAGKLLHDFRNHEGPINCLDFHPHEFLLATVVRT FTGHRSSCASLDFHPFGEFFASGSSDTNMKIWDMRKKGCIHTYKGHTRRIDVLRFTPDGRWIVS GGSDNSVKIWDLTAGKLLHDFRNHEGPINCLDFHPHEFLLATVVRTFTGHRSSCASLDFHPFGE FFASGSSDTNMKIWDMRKKGCIHTYKGHTRRIDVLRFTPDGRWIVSGGSDNSVKIWDLTAGKLL HDFRNHEGPINCLDFHPHEFLLAT(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |