Detail information of Os10g0494800_circ_g.3


General Information
CircRNA Name Os10g0494800_circ_g.3
ID in PlantcircBase osa_circ_007289
Alias NA
Organism Oryza sativa
Position chr10: 18802886-18803362  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0494800
Parent gene annotation Similar to Katanin p80 WD40-containing subunit B1 (Katanin p80 s
ubunit B1) (p80 katanin). (Os10t0494800-01)
Parent gene strand -
Alternative splicing Os10g0494800_circ_g.4 Os10g0494800_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0494800-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCATGTTAGTGTCTGAAGACCCAGAAGCGAAGAATTCTCCAAAAGGATGGAAATCAAGGGACG
CACAACTCGATCTATGTCCAGTAAAAGTACGAACGActgtagccaataagaactcatgggggtg
aaaatctaagcagttaattgggccttcatgattcctaaagtcatgcaagagctttccagctgtc
aaatccca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTAGCCAATAAGAACTCATGGGGGTGAAAATCTAAGCAGTTAATTGGGCCTTCATGATTCCT
AAAGTCATGCAAGAGCTTTCCAGCTGTCAAATCCCAGATCTAGCAAGATGATCAGAAAACAATT
TCAGTGACCCGAGAGATACATATGACAGCTTAATGGTTCGAATAATCAGCATAGCATGTTATTT
CTTTTCCAGTGCTGTGATTGTGTTTGCCTTGTATTAATAGACATATTCAGAATTGTACCTTTAC
AGAGTTATCAGATCCACCAGAGACAATCCACCGGCCATCAGGAGTGAATCTAAGCACATCAATC
CGCCGTGTGTGACCTTTATATGTGTGAATGCATCCCTTTTTCCGCATATCCCATATTTTCATGT
TAGTGTCTGAAGACCCAGAAGCGAAGAATTCTCCAAAAGGATGGAAATCAAGGGACGCACAACT
CGATCTATGTCCAGTAAAAGTACGAACGA
Conservation Information
Conserved circRNAs osi_circ_008563
PMCS 0.3765395
Functional Information
Coding potential Y
Potential coding position 18803311-18802895(+)
18803234-18802911(+)
18802908-18803266(-)
18803269-18802888(-)
Potential amino acid sequence MEIKGRTTRSMSSKSTNDCSQ*(+)
MHPFFRISHIFMLVSEDPEAKNSPKGWKSRDAQLDLCPVKVRTTVANKNSWG*(+)
MSSYWLQSFVLLLDIDRVVRPLISILLENSSLLGLQTLT*(-)
MKIWDMRKKGCIHTYKGHTRRIDVLRFTPDGRWIVSGGSDNSVKIWDLTAGKLLHDFRNHEGPI
NCLDFHPHEFLLATVVRTFTGHRSSCASLDFHPFGEFFASGSSDTNMKIWDMRKKGCIHTYKGH
TRRIDVLRFTPDGRWIVSGGSDNSVKIWDLTAGKLLHDFRNHEGPINCLDFHPHEFLLATVVRT
FTGHRSSCASLDFHPFGEFFASGSSDTNMKIWDMRKKGCIHTYKGHTRRIDVLRFTPDGRWIVS
GGSDNSVKIWDLTAGKLLHDFRNHEGPINCLDFHPHEFLLATVVRTFTGHRSSCASLDFHPFGE
FFASGSSDTNMKIWDMRKKGCIHTYKGHTRRIDVLRFTPDGRWIVSGGSDNSVKIWDLTAGKLL
HDFRNHEGPINCLDFHPHEFLLAT(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017