Plant Circular RNA Database

Detail information of Os10g0512800_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os10g0512800_circ_g.1
					
						ID in PlantcircBase
						osa_circ_007652
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr10: 19758829-19761313  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os10g0512800						
					
						Parent gene annotation
						
							Similar to predicted protein. (Os10t0512800-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os10g0512800_circ_g.2 Os10g0512800_circ_g.3 Os10g0512800_circ_g.4 Os10g0512800_circ_g.5 Os10g0512800_circ_g.6 Os10g0512800_circ_g.7 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os10t0512800-01:6

General Information
CircRNA Name	Os10g0512800_circ_g.1
ID in PlantcircBase	osa_circ_007652
Alias	NA
Organism	Oryza sativa
Position	chr10: 19758829-19761313 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os10g0512800
Parent gene annotation	Similar to predicted protein. (Os10t0512800-01)
Parent gene strand	-
Alternative splicing	Os10g0512800_circ_g.2 Os10g0512800_circ_g.3 Os10g0512800_circ_g.4 Os10g0512800_circ_g.5 Os10g0512800_circ_g.6 Os10g0512800_circ_g.7
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os10t0512800-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GTATTAACTTGGTCAAGCGTTGTATTCTGCTCATCAGAGCAGCTTTTGCTTCCTCTTCCTCCTC
CAGGCGAGATTGCATTTTTACCTGGCCCTCCTCCAActtctgttgtagctgctcctgaaggacg
cgattatcagctgatcttaactgtagcattaaaaaaaggcacaatcgtgagaaaagttaatact
tggtatgg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 705
Transcript exons: 19758829-19758876,19758981-19759031,19759168-19759287,19
760274-19760414,19760854-19761018,19761134-19761313
CTTCTGTTGTAGCTGCTCCTGAAGGACGCGATTATCAGCTGATCTTAACTCTAATTCAAAAGCC
TTCTCACTGCACTGAGCTGTCAGCTTGGTAATCGTCTGTTGCATATCCATCATGGAAGCATTAG
CAACTGATGCCTCACCGCTTTCCATAAGTTTTTGCTCCAGGGCTCGCATATGCCTTCTCTTCTC
CCGGATTTCACGCTCTAAATTATCTATTTGATTCTTCGTCCCTTCAGGGTCTTCAATAGATTGC
TCAATCAGTCTTTTCAGCGAACTGGTACCAAAAGCAATTTCACCAGCAAGCATCTTCACTTGCT
CAATCAGTAGATCCATTTGATCCGATGCGGTGATCCCTCCCTGCATTTCATCGGGTCCAGAACC
AGCAATCGAAGAATGGTCTCCACTAGCACATCTTAGTTGATTGATCTCATCCACAGCATCTGGC
GAAGCAGATGATAGCGAATCTTTCGTGGCACTATCATTTTGGACAAGCATAGAACTATCTTGTG
ATGTGCTTACTTTATCTTCCTCATTGACCGAATTATGGCGCTGATGACTAGACGTATCTGTCAA
GGCAGGAATATTGTTCTTTGTAGAAACAAGTATTAACTTGGTCAAGCGTTGTATTCTGCTCATC
AGAGCAGCTTTTGCTTCCTCTTCCTCCTCCAGGCGAGATTGCATTTTTACCTGGCCCTCCTCCA
A
						
					

						Genomic sequence
						
							CTTCTGTTGTAGCTGCTCCTGAAGGACGCGATTATCAGCTGATCTTAACTGTAGCATTAAAAAA
AGGCACAATCGTGAGAAAAGTTAATACTTGGTATGGGATAAATTTTATTTTAGACAGCATACTG
AAACATTTATTTTTAAAATATCACCTCTAATTCAAAAGCCTTCTCACTGCACTGAGCTGTCAGC
TTGGTAATCGTCTGTTTTCACAAAAGTCAAAAAATGTTACTAAGAACATCACATGAACATCAAG
AACGCCAGGGGCTCTGGAGCCTGGACAGAGAAAAATTGCATGAAAATTAAGAAACTTGGTACTA
TGAAGTCCGGATGCATCACCTGTTGCATATCCATCATGGAAGCATTAGCAACTGATGCCTCACC
GCTTTCCATAAGTTTTTGCTCCAGGGCTCGCATATGCCTTCTCTTCTCCCGGATTTCACGCTCT
AAATTATCTATCTGTGATATAAAAAAAATATATGTGCATCTGAGCATTAAGACAAAGAATAGGA
CACTGGAGCATCAAAATTAATGAGGATTTGAAGATAGTGATGACATAGAGAGTTAGAGACATAA
ATATAGCAAAATGGAGTGCTAAGGTGTGACATGAAGCATGGAGATATATTCGTAATGAAACAAA
ATCAAGAAGTTCAGCACTTTATACTGCAGTCAACAATTCCATACGTCTATCCTTCATAAATACA
AAATAAGAAACTAGTATAAGTTCATTAATCCTTGAGAAGATAACTTTTAAACTTCAGGTAACAA
TTCTTATCAGTCATAGATCTGTTCTTACATAAGAAGTACTCCGTAAGATACAATAAATAACAAA
AAAAAACTATGAGTGCCCAGCCATGTATAATATTATTTTACCTGCCATAGAAGTCAGCATAACA
GGGGTCAGGGAACTATTCTTTTTCGAAATTTTGTTGAATAGAAATTGGTATGATTTGTTCATAA
GATGTGTCATTTGTTCTGCTACCGATTTGTGTCTAGAAGTAAATTACATGATTGCTTCTTCTAC
AAATAGAAAAGATCGAAAACTGCCCAAAGGTAGTAACTACATATCTACTATTATAAAAATTGAA
GACGTTTTTGCCGGAACTTTGGTACGTCATCCGTGTTTGAGTCGGTTTTTGAGTTCATTCGTTT
TTGAAATTATATATTTGTATTTGAGTAGGTTTTTAAGTTCGTTCACTTTTGGAAATATAGAAGT
CGTCGTATAAGAAATCTCTTTAGAAAAAAACTCGCATACTAACTCAAGACAATCAGACTCCTAA
TTGTAGCTTATGACCTTGTAAAAACAATATCCAAGCAAATTCCTACATTGAATTTCATCTTAGC
TAAATCGTATAACAATAATAAGATTAAGATAGCCTTCAACCGTTGCAACGCATGGGCATTTTTT
CTAGTGAAGTATTAAGAAAAAGGAGGAAAAATATTACTTGATTCTTCGTCCCTTCAGGGTCTTC
AATAGATTGCTCAATCAGTCTTTTCAGCGAACTGGTACCAAAAGCAATTTCACCAGCAAGCATC
TTCACTTGCTCAATCAGTAGATCCATTTGATCCGATGCGGTGATCCCTCCCTGAAATGCAAAAT
ACAGGAAATCATAGGCAATTAAATTCACAAATTCAGCATGTTCACTACAAAATGAAAACTAATT
GAATTAATATTGTACTGTCTAGTGAGCGCTTTGCATTCATAATTGTTCAAACTGTTCAGTAGGA
AGGCAGGGCCAACTATCAATGGAATCCACTGGATATGGCTAATACGCCCATCCAGAATAGACCC
ATTGTGTTTTGGAAGTGAAAGAGGACAGTGATAAGGGGCGGAAATTCTCATACATTAACTGCCA
AAAAAACAGACTAATTCGATTCTAAAAAAATAAATAGTATACATGGGTCTGTCATATTGATGTA
AATCCAAGGAACTTATTTTATAAGGACACTTCCACACAATAATTGCGAACAATTTATTCACAAG
GCACATGTCATTAGACAGTAACCAGCGTAAAGTCAAACTACCTGCATTTCATCGGGTCCAGAAC
CAGCAATCGAAGAATGGTCTCCACTAGCACATCTTAGTTGATTGATCTCATCCACAGCATCTGG
CGAAGCAGATGATAGCGAATCTTTCGTGGCACTATCATTTTGGACAAGCATAGAACTATCTTGT
GATGTGCTTACTTTCTGAAATGGAAAGGACCAGTACATTGTTGAAGTGAAATGGCCTGCCTGAT
GAATGCATATCATAAAGGAAAAATTGTATGTGCCAATGCACAATAGTGTAATAACGAGCACTTA
CATCTTCCTCATTGACCGAATTATGGCGCTGATGACTAGACGTATCTGTCAAGGCAGGAATATT
GTTCTTTGTAGAAACAAGTATTAACTTGGTCAAGCGTTGTATTCTGCTCATCAGAGCAGCTTTT
GCTTCCTCTTCCTCCTCCAGGCGAGATTGCATTTTTACCTGGCCCTCCTCCAA
						
					

			
		

Sequences
Splice junction sequence	GTATTAACTTGGTCAAGCGTTGTATTCTGCTCATCAGAGCAGCTTTTGCTTCCTCTTCCTCCTC CAGGCGAGATTGCATTTTTACCTGGCCCTCCTCCAActtctgttgtagctgctcctgaaggacg cgattatcagctgatcttaactgtagcattaaaaaaaggcacaatcgtgagaaaagttaatact tggtatgg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 705 Transcript exons: 19758829-19758876,19758981-19759031,19759168-19759287,19 760274-19760414,19760854-19761018,19761134-19761313 CTTCTGTTGTAGCTGCTCCTGAAGGACGCGATTATCAGCTGATCTTAACTCTAATTCAAAAGCC TTCTCACTGCACTGAGCTGTCAGCTTGGTAATCGTCTGTTGCATATCCATCATGGAAGCATTAG CAACTGATGCCTCACCGCTTTCCATAAGTTTTTGCTCCAGGGCTCGCATATGCCTTCTCTTCTC CCGGATTTCACGCTCTAAATTATCTATTTGATTCTTCGTCCCTTCAGGGTCTTCAATAGATTGC TCAATCAGTCTTTTCAGCGAACTGGTACCAAAAGCAATTTCACCAGCAAGCATCTTCACTTGCT CAATCAGTAGATCCATTTGATCCGATGCGGTGATCCCTCCCTGCATTTCATCGGGTCCAGAACC AGCAATCGAAGAATGGTCTCCACTAGCACATCTTAGTTGATTGATCTCATCCACAGCATCTGGC GAAGCAGATGATAGCGAATCTTTCGTGGCACTATCATTTTGGACAAGCATAGAACTATCTTGTG ATGTGCTTACTTTATCTTCCTCATTGACCGAATTATGGCGCTGATGACTAGACGTATCTGTCAA GGCAGGAATATTGTTCTTTGTAGAAACAAGTATTAACTTGGTCAAGCGTTGTATTCTGCTCATC AGAGCAGCTTTTGCTTCCTCTTCCTCCTCCAGGCGAGATTGCATTTTTACCTGGCCCTCCTCCA A
Genomic sequence	CTTCTGTTGTAGCTGCTCCTGAAGGACGCGATTATCAGCTGATCTTAACTGTAGCATTAAAAAA AGGCACAATCGTGAGAAAAGTTAATACTTGGTATGGGATAAATTTTATTTTAGACAGCATACTG AAACATTTATTTTTAAAATATCACCTCTAATTCAAAAGCCTTCTCACTGCACTGAGCTGTCAGC TTGGTAATCGTCTGTTTTCACAAAAGTCAAAAAATGTTACTAAGAACATCACATGAACATCAAG AACGCCAGGGGCTCTGGAGCCTGGACAGAGAAAAATTGCATGAAAATTAAGAAACTTGGTACTA TGAAGTCCGGATGCATCACCTGTTGCATATCCATCATGGAAGCATTAGCAACTGATGCCTCACC GCTTTCCATAAGTTTTTGCTCCAGGGCTCGCATATGCCTTCTCTTCTCCCGGATTTCACGCTCT AAATTATCTATCTGTGATATAAAAAAAATATATGTGCATCTGAGCATTAAGACAAAGAATAGGA CACTGGAGCATCAAAATTAATGAGGATTTGAAGATAGTGATGACATAGAGAGTTAGAGACATAA ATATAGCAAAATGGAGTGCTAAGGTGTGACATGAAGCATGGAGATATATTCGTAATGAAACAAA ATCAAGAAGTTCAGCACTTTATACTGCAGTCAACAATTCCATACGTCTATCCTTCATAAATACA AAATAAGAAACTAGTATAAGTTCATTAATCCTTGAGAAGATAACTTTTAAACTTCAGGTAACAA TTCTTATCAGTCATAGATCTGTTCTTACATAAGAAGTACTCCGTAAGATACAATAAATAACAAA AAAAAACTATGAGTGCCCAGCCATGTATAATATTATTTTACCTGCCATAGAAGTCAGCATAACA GGGGTCAGGGAACTATTCTTTTTCGAAATTTTGTTGAATAGAAATTGGTATGATTTGTTCATAA GATGTGTCATTTGTTCTGCTACCGATTTGTGTCTAGAAGTAAATTACATGATTGCTTCTTCTAC AAATAGAAAAGATCGAAAACTGCCCAAAGGTAGTAACTACATATCTACTATTATAAAAATTGAA GACGTTTTTGCCGGAACTTTGGTACGTCATCCGTGTTTGAGTCGGTTTTTGAGTTCATTCGTTT TTGAAATTATATATTTGTATTTGAGTAGGTTTTTAAGTTCGTTCACTTTTGGAAATATAGAAGT CGTCGTATAAGAAATCTCTTTAGAAAAAAACTCGCATACTAACTCAAGACAATCAGACTCCTAA TTGTAGCTTATGACCTTGTAAAAACAATATCCAAGCAAATTCCTACATTGAATTTCATCTTAGC TAAATCGTATAACAATAATAAGATTAAGATAGCCTTCAACCGTTGCAACGCATGGGCATTTTTT CTAGTGAAGTATTAAGAAAAAGGAGGAAAAATATTACTTGATTCTTCGTCCCTTCAGGGTCTTC AATAGATTGCTCAATCAGTCTTTTCAGCGAACTGGTACCAAAAGCAATTTCACCAGCAAGCATC TTCACTTGCTCAATCAGTAGATCCATTTGATCCGATGCGGTGATCCCTCCCTGAAATGCAAAAT ACAGGAAATCATAGGCAATTAAATTCACAAATTCAGCATGTTCACTACAAAATGAAAACTAATT GAATTAATATTGTACTGTCTAGTGAGCGCTTTGCATTCATAATTGTTCAAACTGTTCAGTAGGA AGGCAGGGCCAACTATCAATGGAATCCACTGGATATGGCTAATACGCCCATCCAGAATAGACCC ATTGTGTTTTGGAAGTGAAAGAGGACAGTGATAAGGGGCGGAAATTCTCATACATTAACTGCCA AAAAAACAGACTAATTCGATTCTAAAAAAATAAATAGTATACATGGGTCTGTCATATTGATGTA AATCCAAGGAACTTATTTTATAAGGACACTTCCACACAATAATTGCGAACAATTTATTCACAAG GCACATGTCATTAGACAGTAACCAGCGTAAAGTCAAACTACCTGCATTTCATCGGGTCCAGAAC CAGCAATCGAAGAATGGTCTCCACTAGCACATCTTAGTTGATTGATCTCATCCACAGCATCTGG CGAAGCAGATGATAGCGAATCTTTCGTGGCACTATCATTTTGGACAAGCATAGAACTATCTTGT GATGTGCTTACTTTCTGAAATGGAAAGGACCAGTACATTGTTGAAGTGAAATGGCCTGCCTGAT GAATGCATATCATAAAGGAAAAATTGTATGTGCCAATGCACAATAGTGTAATAACGAGCACTTA CATCTTCCTCATTGACCGAATTATGGCGCTGATGACTAGACGTATCTGTCAAGGCAGGAATATT GTTCTTTGTAGAAACAAGTATTAACTTGGTCAAGCGTTGTATTCTGCTCATCAGAGCAGCTTTT GCTTCCTCTTCCTCCTCCAGGCGAGATTGCATTTTTACCTGGCCCTCCTCCAA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.21772786

Conservation Information
Conserved circRNAs	NA
PMCS	0.21772786

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							19761294-19758831(-)
						
						Potential amino acid sequence
						
							MQSRLEEEEEAKAALMSRIQRLTKLILVSTKNNIPALTDTSSHQRHNSVNEEDKVSTSQDSSML
VQNDSATKDSLSSASPDAVDEINQLRCASGDHSSIAGSGPDEMQGGITASDQMDLLIEQVKMLA
GEIAFGTSSLKRLIEQSIEDPEGTKNQIDNLEREIREKRRHMRALEQKLMESGEASVANASMMD
MQQTITKLTAQCSEKAFELELRSADNRVLQEQLQQKLEEGQVKMQSRLEEEEEAKAALMSRIQR
LTKLILVSTKNNIPALTDTSSHQRHNSVNEEDKVSTSQDSSMLVQNDSATKDSLSSASPDAVDE
INQLRCASGDHSSIAGSGPDEMQGGITASDQMDLLIEQVKMLAGEIAFGTSSLKRLIEQSIEDP
EGTKNQIDNLEREIREKRRHMRALEQKLMESGEASVANASMMDMQQTITKLTAQCSEKAFELEL
RSADNRVLQEQLQQKLEEGQVKMQSRLEEEEEAKAALMSRIQRLTKLILVSTKNNIPALTDTSS
HQRHNSVNEEDKVSTSQDSSMLVQNDSATKDSLSSASPDAVDEINQLRCASGDHSSIAGSGPDE
MQGGITASDQMDLLIEQVKMLAGEIAFGTSSLKRLIEQSIEDPEGTKNQIDNLEREIREKRRHM
RALEQKLMESGEASVANASMMDMQQTITKLTAQCSEKAFELELRSADNRVLQEQLQQKLEEGQV
KMQSRLEEEEEAKAALMSRIQRLTKLILVSTKNNIPALTDTSSHQRHNSVNEEDKVSTSQDSSM
LVQNDSATKDSLSSASPDAVDEINQLRCASGDHSSIAGSGPDEMQGGITASDQMDLLIEQVKML
AGEIAFGTSSLKRLIEQSIEDPEGTKNQIDNLEREIREKRRHMRALEQKLMESGEASVANASMM
DMQQTITKLTAQCSEKAFELELRSADNRVLQEQLQQK(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	19761294-19758831(-)
Potential amino acid sequence	MQSRLEEEEEAKAALMSRIQRLTKLILVSTKNNIPALTDTSSHQRHNSVNEEDKVSTSQDSSML VQNDSATKDSLSSASPDAVDEINQLRCASGDHSSIAGSGPDEMQGGITASDQMDLLIEQVKMLA GEIAFGTSSLKRLIEQSIEDPEGTKNQIDNLEREIREKRRHMRALEQKLMESGEASVANASMMD MQQTITKLTAQCSEKAFELELRSADNRVLQEQLQQKLEEGQVKMQSRLEEEEEAKAALMSRIQR LTKLILVSTKNNIPALTDTSSHQRHNSVNEEDKVSTSQDSSMLVQNDSATKDSLSSASPDAVDE INQLRCASGDHSSIAGSGPDEMQGGITASDQMDLLIEQVKMLAGEIAFGTSSLKRLIEQSIEDP EGTKNQIDNLEREIREKRRHMRALEQKLMESGEASVANASMMDMQQTITKLTAQCSEKAFELEL RSADNRVLQEQLQQKLEEGQVKMQSRLEEEEEAKAALMSRIQRLTKLILVSTKNNIPALTDTSS HQRHNSVNEEDKVSTSQDSSMLVQNDSATKDSLSSASPDAVDEINQLRCASGDHSSIAGSGPDE MQGGITASDQMDLLIEQVKMLAGEIAFGTSSLKRLIEQSIEDPEGTKNQIDNLEREIREKRRHM RALEQKLMESGEASVANASMMDMQQTITKLTAQCSEKAFELELRSADNRVLQEQLQQKLEEGQV KMQSRLEEEEEAKAALMSRIQRLTKLILVSTKNNIPALTDTSSHQRHNSVNEEDKVSTSQDSSM LVQNDSATKDSLSSASPDAVDEINQLRCASGDHSSIAGSGPDEMQGGITASDQMDLLIEQVKML AGEIAFGTSSLKRLIEQSIEDPEGTKNQIDNLEREIREKRRHMRALEQKLMESGEASVANASMM DMQQTITKLTAQCSEKAFELELRSADNRVLQEQLQQK(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os10g0512800_circ_g.1

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