Detail information of Os01g0527400_circ_g.3


General Information
CircRNA Name Os01g0527400_circ_g.3
ID in PlantcircBase osa_circ_001983
Alias Os_ciR5075
Organism Oryza sativa
Position chr1: 18926879-18928041  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os01g0527400
Parent gene annotation Transcription elongation factor S-II, central region domain cont
aining protein. (Os01t0527400-01)
Parent gene strand +
Alternative splicing Os01g0527400_circ_g.1 Os01g0527400_circ_g.2 Os01g0527400_circ_g.4
Support reads 3
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0527400-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATTCTTATCTAAATTCTAATTGTTGTTGCTGAACATTTTAGGTTGGCTTGACAGCAGCAGAG
AGAACATCTGAACCTGAAGAATCAAGGAAGTTGCAGaaagatctacttatgaagctcttggttc
tgacttccagaagtataaccagaaattgagacagttactgttcaacatcaaggtatgtcctgct
gacaactg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAAGATCTACTTATGAAGCTCTTGGTTCTGACTTCCAGAAGTATAACCAGAAATTGAGACAGTT
ACTGTTCAACATCAAGGTATGTCCTGCTGACAACTGCACAGTTCACTTATTAGTTTATATCTAG
TCCTAGAAATCACCAGTTTCACAAGAATAATACTAGGTAATTTTCTTATTGTTGTAACTCACAT
CACCATTAAACTTTCTCCTCCAGACTCTTAAGCTCAAATCTTTATTTAGTCTGAAATGTTGTTT
TCTACTTATCATAATAGCAACCACTAAAATTTTGTGTCATTGTACTCTTAACGACATAAAGGTT
TTTAACTCACCCAACCTTTACATCTCTGTGAATTATAATTTGATTGATAACCTAACATATTGCT
GTTGTTTTTCATTTGCAGAATAGCCCTGTACTACGGAACCGGCTGATGAACAAGGAGCTTGATC
CTCCAGTCCTGTTAACAATGTCTCCTGACGAACTAAAGGTGTAACCATCTTTCAAGAATTTTGC
ATTCTTTCAATTCAAAATGTACTTTACAGTTCGTTTCTTGTATGAAGCTGCATCAAAACAAAAA
CCAAACTAGTAACCTAAAACCAAAAAAAGGGGGTAATTTGGTTTGGTCTTCGGATTATTTTTAC
GCACTCCCCGTGGCTATGATTGTATCCATGGTTCTAGTGCCTTAGCCTAGTTGGTAGGAGTATA
GAACATATTGGTTATAACTGTAGTTAATACAATGCATTTCTAGTTTTCTACACTAAATTCAAAT
AGGAGGCATGTCTGGTGCAAAACCAATTTGGTTCAAGCACCAATAAATGTTGAGCATTGCTTTT
TTAAGAGAGTATAAAATGTATTTTTGAACATAATGTATATTAGAATGGAGGACGAAAATGTAAT
TGACTAAAGTTTGGTTTTCCGGAAGATTCTCTTTTAGTGGGTTGCTCACTTCAACCTGATATGC
CTCCTTCTGTAACAGCCACCTGTTATTTCAATGAACTTCTTTAATATATTCTCTTTGCTATAAT
TATGATGTGTTCCTCATTTAACTTAAATATCTTTCTGTTCCATTCTTATCTAAATTCTAATTGT
TGTTGCTGAACATTTTAGGTTGGCTTGACAGCAGCAGAGAGAACATCTGAACCTGAAGAATCAA
GGAAGTTGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.216376469
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015