Detail information of Os01g0527400_circ_g.1


General Information
CircRNA Name Os01g0527400_circ_g.1
ID in PlantcircBase osa_circ_001981
Alias NA
Organism Oryza sativa
Position chr1: 18924950-18928266  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0527400
Parent gene annotation Transcription elongation factor S-II, central region domain cont
aining protein. (Os01t0527400-01)
Parent gene strand +
Alternative splicing Os01g0527400_circ_g.2 Os01g0527400_circ_g.3 Os01g0527400_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0527400-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTTTTATCTAGATGACTGATGCACGATGTGTAAGATGTGCAGAAAAGGAAGTAGGTGTATCT
GATATTATTCATGCTGGTCATGGAGATCGCTATCAGgatataacagaaactgagggaagcttat
cagtaactggtcagtggttttatagaccagaagaggctgacaaaaagggtgggggaagctggaa
agcaagtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATATAACAGAAACTGAGGGAAGCTTATCAGTAACTGGTCAGTGGTTTTATAGACCAGAAGAGG
CTGACAAAAAGGGTGGGGGAAGCTGGAAAGCAAGTGACACGAGGGAGTTATTTTATAGTTTCCA
TATTGATGATGTGCCAGCAGAGTCAGTTATGCACAAGTGTGTAGTCCATTTCATTCCTCAACAT
AAGAAAATTCCCAGCCGGAAGGAACACCCTGGATTCATTGTCCAAAAGGTCTATGACACAGTTG
CGAAGAAACTTTGGAACCTAACAGACAAAGATTATGAGGATAACAAGCAACATGAGATTGATCT
TCTCGTTAAGAAAACAATAGACCGTATTGGACAGCTTTCTGATATTGAACCTGCAGATGCTCCT
GGTGACAACAATGATCAGCTCTCAAACAAGCGAGGACTGCGGAAGAGACCTGTGCTTCCTATAG
ATGTTTCAAGAGATGATGCTTTAGCAGGCAAATCAGAGCAATTTGGAAAAGCAGAGACACCTGG
AAGTGATAAGCTAAAGAATTATGCCACCCTTGTCAAGTATAAAGCTGTTACTGGTGATCAATAT
CGTGATAGGTGGCTTGATAAATTAGTGGATACTATTCCACTAACATCAAAGGAAAGTGCTGGGG
CTTCTCATGCTGATCCTGGTGGTGCTACCAAAAGTTCAACTAATGGTTCATCTGCAAAGGAAGT
AAGTTCTGGTGTAAGTTGTTTCTTTCCCTGTGATGGGAATGGTTGAAACTCTAAACTCCTCCAT
GTTGAATTGATCTTCCACACTCTTAACCTTGTCTGGAATATGCCACATAGGAACGCTACAGTTA
ATTATCTTGGTAACATTAGGTTAAGTTATCATCTCACTTTCCAACAAGCTTATTCATCTATTTG
GTGGTGATATGAAATTTGTATATGCGCTACAAATTTACTGTTATATTTAACATTAACACTTTTT
TGGTTCCGAGTATCGGTAGTAAACCGCCTTTCCTTGTTCCTATGTTCTCTAGACAAGTGGCCTG
GGATGACTACAAACTACAGGGTTCACTTGACAAGGCATTATTGGACTAGTGATTGCTTCACTGC
ACTGCCAATACCGAATATTTTTTTGTTTGTGTCAAGCATTTTTCTTTCTGTGTTAATGTGCAAA
CATAAAGATTAAAAGTAAAACTCACAACATCTCATGGATGCTTAAATGAGCAAGCGTTAAGTCA
TACCATGTTATATCTATCACTGGTCAGTGTACTTTGTTTGCTAAGGCATACTAGTGATTGCCTC
TCAGCACTGAAAAATACAGCATAGGGCTATTACGTTTGCAACGGTCAATCGGTCATTTATTAGT
AGTCGTGTAAGCCTCTGGTTGAGAATGTTTAATTTGATAGAAGTAACATGATAACAGAATCACA
AGGACCTGAAAGAAGCATGCTCACAGTTACATGGTCTCTGAACCGCATACGGGTTAAAAATCGG
AAGAAGGGTTTTATTACTAAATGAATCACACACTTCATGTACTGAGCGCAGAAGACAGTAATTT
TTGTTAGTGTGGACTGTGATAACCATGTTTGTTGCTTTGGACAATTTTGCGATGCTAAATTTGT
CACCTTGTTCTGTAAATTTATATTTATCGAGAAAGTAGTGCCATTCATTGAAAATTATTTGTTA
GACCTCTTATTTTTGGGATGGGCACATGTTTTTTTTCCTTCTTTTTATGTAATCTCTTGGCAAC
TTTGCATGTTCTTTTATTGTTGGGATTTATAAGAAGTATATGTTCACTAAAGCCTTCTATTTGT
TTCATTGGTTCCCTGTGTTTTGTTGTTTTGTTTTCTTTATTTGCCTTCCCTCCTTAGATGGTTT
CTGATTATCTGTTTTCAGGACAATGAAAAATCTTATTCACCTGATGTGATTGTTTCAATAATGG
CCTCCTTAGAAAGATCTACTTATGAAGCTCTTGGTTCTGACTTCCAGAAGTATAACCAGAAATT
GAGACAGTTACTGTTCAACATCAAGGTATGTCCTGCTGACAACTGCACAGTTCACTTATTAGTT
TATATCTAGTCCTAGAAATCACCAGTTTCACAAGAATAATACTAGGTAATTTTCTTATTGTTGT
AACTCACATCACCATTAAACTTTCTCCTCCAGACTCTTAAGCTCAAATCTTTATTTAGTCTGAA
ATGTTGTTTTCTACTTATCATAATAGCAACCACTAAAATTTTGTGTCATTGTACTCTTAACGAC
ATAAAGGTTTTTAACTCACCCAACCTTTACATCTCTGTGAATTATAATTTGATTGATAACCTAA
CATATTGCTGTTGTTTTTCATTTGCAGAATAGCCCTGTACTACGGAACCGGCTGATGAACAAGG
AGCTTGATCCTCCAGTCCTGTTAACAATGTCTCCTGACGAACTAAAGGTGTAACCATCTTTCAA
GAATTTTGCATTCTTTCAATTCAAAATGTACTTTACAGTTCGTTTCTTGTATGAAGCTGCATCA
AAACAAAAACCAAACTAGTAACCTAAAACCAAAAAAAGGGGGTAATTTGGTTTGGTCTTCGGAT
TATTTTTACGCACTCCCCGTGGCTATGATTGTATCCATGGTTCTAGTGCCTTAGCCTAGTTGGT
AGGAGTATAGAACATATTGGTTATAACTGTAGTTAATACAATGCATTTCTAGTTTTCTACACTA
AATTCAAATAGGAGGCATGTCTGGTGCAAAACCAATTTGGTTCAAGCACCAATAAATGTTGAGC
ATTGCTTTTTTAAGAGAGTATAAAATGTATTTTTGAACATAATGTATATTAGAATGGAGGACGA
AAATGTAATTGACTAAAGTTTGGTTTTCCGGAAGATTCTCTTTTAGTGGGTTGCTCACTTCAAC
CTGATATGCCTCCTTCTGTAACAGCCACCTGTTATTTCAATGAACTTCTTTAATATATTCTCTT
TGCTATAATTATGATGTGTTCCTCATTTAACTTAAATATCTTTCTGTTCCATTCTTATCTAAAT
TCTAATTGTTGTTGCTGAACATTTTAGGTTGGCTTGACAGCAGCAGAGAGAACATCTGAACCTG
AAGAATCAAGGAAGTTGCAGGTACTGTACATCATTCGTATTATATTCAGTAATTGTAGTTACGC
AAGGGAAGAGTGAAGAATGTTCATCATGATAACTGAGTTTTCACATAGAGTTATTACTTTACGG
TTCTCTGAGTTTGGTGTTTGTTTTATCTAGATGACTGATGCACGATGTGTAAGATGTGCAGAAA
AGGAAGTAGGTGTATCTGATATTATTCATGCTGGTCATGGAGATCGCTATCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.128882605
Functional Information
Coding potential Y
Potential coding position 18925107-18928263(+)
Potential amino acid sequence MHKCVVHFIPQHKKIPSRKEHPGFIVQKVYDTVAKKLWNLTDKDYEDNKQHEIDLLVKKTIDRI
GQLSDIEPADAPGDNNDQLSNKRGLRKRPVLPIDVSRDDALAGKSEQFGKAETPGSDKLKNYAT
LVKYKAVTGDQYRDRWLDKLVDTIPLTSKESAGASHADPGGATKSSTNGSSAKEDNEKSYSPDV
IVSIMASLERSTYEALGSDFQKYNQKLRQLLFNIKNSPVLRNRLMNKELDPPVLLTMSPDELKV
GLTAAERTSEPEESRKLQMTDARCVRCAEKEVGVSDIIHAGHGDRYQDITETEGSLSVTGQWFY
RPEEADKKGGGSWKASDTRELFYSFHIDDVPAESVMHKCVVHFIPQHKKIPSRKEHPGFIVQKV
YDTVAKKLWNLTDKDYEDNKQHEIDLLVKKTIDRIGQLSDIEPADAPGDNNDQLSNKRGLRKRP
VLPIDVSRDDALAGKSEQFGKAETPGSDKLKNYATLVKYKAVTGDQYRDRWLDKLVDTIPLTSK
ESAGASHADPGGATKSSTNGSSAKEDNEKSYSPDVIVSIMASLERSTYEALGSDFQKYNQKLRQ
LLFNIKNSPVLRNRLMNKELDPPVLLTMSPDELKVGLTAAERTSEPEESRKLQMTDARCVRCAE
KEVGVSDIIHAGHGDRYQDITETEGSLSVTGQWFYRPEEADKKGGGSWKASDTRELFYSFHIDD
VPAESVMHKCVVHFIPQHKKIPSRKEHPGFIVQKVYDTVAKKLWNLTDKDYEDNKQHEIDLLVK
KTIDRIGQLSDIEPADAPGDNNDQLSNKRGLRKRPVLPIDVSRDDALAGKSEQFGKAETPGSDK
LKNYATLVKYKAVTGDQYRDRWLDKLVDTIPLTSKESAGASHADPGGATKSSTNGSSAKEDNEK
SYSPDVIVSIMASLERSTYEALGSDFQKYNQKLRQLLFNIKNSPVLRNRLMNKELDPPVLLTMS
PDELKVGLTAAERTSEPEESRKLQMTDARCVRCAEKEVGVSDIIHAGHGDRYQDITETEGSLSV
TGQWFYRPEEADKKGGGSWKASDTRELFYSFHIDDVPAESVMHKCVVHFIPQHKKIPSRKEHPG
FIVQKVYDTVAKKLWNLTDKDYEDNKQHEIDLLVKKTIDRIGQLSDIEPADAPGDNNDQLSNKR
GLRKRPVLPIDVSRDDALAGKSEQFGKAETPGSDKLKNYATLVKYKAVTGDQYRDRWLDKLVDT
IPLTSKESAGASHADPGGATKSSTNGSSAKEDNEKSYSPDVIVSIMASLERSTYEALGSDFQKY
NQKLRQLLFNIKNSPVLRNRLMNKELDPPVLLTMSPDELKVGLTAAERTSEPEESRKLQMTDAR
CVRCAEKEVGVSDIIHAGHGDRYQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017