Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | BGIOSGA006922_circ_g.7 |
| ID in PlantcircBase | osi_circ_003734 |
| Alias | 2:6611580|6614799 |
| Organism | Oryza sativa ssp. indica |
| Position | chr2: 6611580-6614799 JBrowse» |
| Reference genome | Oryza_indica.ASM465v1.42 |
| Type | e-circRNA |
| Identification method | find_circ |
| Parent gene | BGIOSGA006922 |
| Parent gene annotation | NA |
| Parent gene strand | - |
| Alternative splicing | BGIOSGA006922_circ_g.6 BGIOSGA006922_circ_g.8 BGIOSGA006922_circ_g.9 |
| Support reads | NA |
| Tissues | leaf |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | BGIOSGA006922-TA:9 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | osa_circ_013718* |
| PMCS |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
6614738-6611582(-) 6614751-6611874(+) |
| Potential amino acid sequence |
MLSNLRLESKIEEILRNSATSEFGGVYYYSERGDRLIDLDAFHEKLLQMSQLLNPQLSESEKSE LKESFHQMLKWAWRYNKNLEEQAAQLHMLTGWSQIVEVALTCMAKLRDERFICPTGADSDAVTC LDIISAKQLSNAACTSLLFKLTMAILRNESSETLRRRQYALLLSYFQYCRSTLDSDVPPPVLRF LLLEEQEGDDDELGLQKVLKEQNELARSNFSIIRKEAQAVIDLVAKDAIHGSEAGKAISFYVLD SLISIDHDKYFLNQIQSRGILRSCLSDVNNYLSKEASFSSESSQRFCTIDAQLSLLLRISHHYG KHGSQILLSMGALHNLSSCNLMGSQKKVDSVSVTNANSRLNSNVVKEQAGEIDKRRSLTAPILR IVTSFTSLVDSADFLEVLDLLEVVQFRCPDTSIKYPQMLSNLRLESKIEEILRNSATSEFGGVY YYSERGDRLIDLDAFHEKLLQMSQLLNPQLSESEKSELKESFHQMLKWAWRYNKNLEEQAAQLH MLTGWSQIVEVALTCMAKLRDERFICPTGADSDAVTCLDIISAKQLSNAACTSLLFKLTMAILR NESSETLRRRQYALLLSYFQYCRSTLDSDVPPPVLRFLLLEEQEGDDDELGLQKVLKEQNELAR SNFSIIRKEAQAVIDLVAKDAIHGSEAGKAISFYVLDSLISIDHDKYFLNQIQSRGILRSCLSD VNNYLSKEASFSSESSQRFCTIDAQLSLLLRISHHYGKHGSQILLSMGALHNLSSCNLMGSQKK VDSVSVTNANSRLNSNVVKEQAGEIDKRRSLTAPILRIVTSFTSLVDSADFLEVLDLLEVVQFR CPDTSIKYPQMLSNLRLESKIEEILRNSATSEFGGVYYYSERGDRLIDLDAFHEKLLQMSQLLN PQLSESEKSELKESFHQMLKWAWRYNKNLEEQAAQLHMLTGWSQIVEVALTCMAKLRDERFICP TGADSDAVTCLDIISAKQLSNAACTSLLFKLTMAILRNESSETLRRRQYALLLSYFQYCRSTLD SDVPPPVLRFLLLEEQEGDDDELGLQKVLKEQNELARSNFSIIRKEAQAVIDLVAKDAIHGSEA GKAISFYVLDSLISIDHDKYFLNQIQSRGILRSCLSDVNNYLSKEASFSSESSQRFCTIDAQLS LLLRISHHYGKHGSQILLSMGALHNLSSCNLMGSQKKVDSVSVTNANSRLNSNVVKEQAGEIDK RRSLTAPILRIVTSFTSLVDSADFLEVLDLLEVVQFRCPDTSIKYPQMLSNLRLESKIEEILRN SATSEFGGVYYYSERGDRLIDLDAFHEKLLQMSQLLNPQLSESEKSELKESFHQMLKWAWRYNK NLEEQAAQLHMLTGWSQIVEVALTCMAKLRDERFICPTGADSDAVTCLDIISAKQLSNAACTSL LFKLTMAILRNESSETLRRRQYALLLSYFQYCRSTLDSDVPPPVLRFLLLEEQEGDDDELGLQK VLKEQNELARSNFSIIRKEAQAVIDLVAKDAIHGSEAGKAISFYVLDSLISIDHDKYFLNQIQS RGILRSCLSDVNNYLSKEASFSSESSQRFCTIDAQLSLLLRISHHYGKHGSQILLSMGALHNLS SCNLMGSQKKVDSVSVTNANSRLNSNVVKEQAGEIDKRRSLTAPILRIVTSFTSLVDSADFLE( -) MEVSGHLNWTTSSKSKTSRKSAESTSEVKDVTILSIGAVSDLLLSISPACSFTTLELSLEFALV TETESTFFCEPIRLHDERLCRAPMDNRIWEPCFP*(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Huang et al., 2021 |