Detail information of BGIOSGA006922_circ_g.7


General Information
CircRNA Name BGIOSGA006922_circ_g.7
ID in PlantcircBase osi_circ_003734
Alias 2:6611580|6614799
Organism Oryza sativa ssp. indica
Position chr2: 6611580-6614799  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA006922
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA006922_circ_g.6 BGIOSGA006922_circ_g.8 BGIOSGA006922_circ_g.9
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA006922-TA:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCAGACCTTTGATTCAAGTCTCAGGTTAGAAAGCATCTGGGGGTATTTAATGGAAGTGTCCGG
ACATCTGAACTGGACAACTTCAAGCAAATCCAAAACctcaagaaaatcagcggagtccacaagt
gaggtgaaagatgtgactattctaagtatcggtgcagtaagtgatctcctcttgtcaatttctc
cagcttgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAAGAAAATCAGCGGAGTCCACAAGTGAGGTGAAAGATGTGACTATTCTAAGTATCGGTGCA
GTAAGTGATCTCCTCTTGTCAATTTCTCCAGCTTGCTCTTTCACTACATTGGAGTTGAGCCTTG
AATTTGCCTAAAACATAAAGATATTGTAAGTATTTTTGAAGAGAGGATAAGCACTCACATTGGT
AACAGAGACAGAGTCAACCTTTTTCTGCGAACCCATCAGGTTGCACGACGAAAGATTATGTAGA
GCACCCATGGACAACAGAATCTGGGAGCCATGTTTCCCATAGTGGTGACTGATTCTCAGAAGTA
ATGACAATTGAGCATCAATAGTGCAAAATCGCTGTGAAGACTCTGATGAGAATGATGCTTCCTA
ATAAAAATAAAAAAGAAAGTCAATGACAAATGGCAAAGGTATAAACGCGAGAAAGAGGACTGGT
AGAATTAATACACTCATTGATATGCTAACTGATAGTACAAAATTACTGCAAATATGGAAACATA
AAAGAACAGATTATCACAACAATCTTACTGTGGAGTACCGTCAACCGTCCACCCACATAACTAC
ATATTCAGCACGTGTATTACATGAAAATTAAATGGAAAGATTCATAAAATGATTGTGTGCAGTC
TTTCAGGAAAAAAAAAAGGAGCATAACCAAACTTTTTAATTTTCAGAAGAGGTCAACTGGAAAC
CATCCTTGTCACCTTGAAGTAACACTGATGGCGTAACATTACTAGCCAATGGGCCAGGCTTTGA
TGATTTAGCGTTGATCATCCAATAATACCCAGAAAAACACTGAGCAATTTCACCTTTAAATACC
CCCCATAACTTGGCAGTACAAAGCATCCATCAATATCCAGACCACTAAACAATTTCATCTTAAA
TTCCTAACCTCATACTTGCACAAAAATGGAAGTTCTCTATAGAGGTCTACAAGCAGAGCCACAG
CTCATTTTCAAGTTTTTTTTTTTTTGGCAGAGACATTTTCAAGAACATGTAAAAATGTGATTTG
CATGACCATGACAAAACAATGCCTTAAAACTATAACAGCAGATTTCTTGGGAAGAAGTAAGAAG
GGAAATGAAGTCTAGACCTTAGACAAGTAGTTGTTAACATCACTTAGACATGATCTGAGAATTC
CTCGACTCTGAATTTGGTTCAAAAAATACTTGTCATGGTCAATACTAATCAGTGAATCAAGAAC
GTAGAATGAAATTGCTTTCCCTGCTTCACTTCCATGGATCGCATCCTTGGCAACCTGTGATGGA
AACAAAATTGATCTCATGTTTGAGTTATAACTGTAGCAATTTCATAGAAAGCAATAATCTCCAT
TTCAAAATTCATATTAGATCTAGGTTTATGGGGTAACATGAGATCAAATCACACCATTGCAATT
TCATATTTTTCAATGGTGTGTTTTGAGCCTTGCACGTGTAGGTGGATAATTGATCTAATGTTCA
TATACAAATTTAAGATTTGAGGAAAACTTTTTGCATTTTGTTTTGACTAAATGTTTGCACAAGT
GCATAAGTAGCTGGATAATCTGTCTCTGATCATATACTCAATTTTAAATTTTAGGATAATTACT
CTTATGTTGCAATTTATGTTGTACCCTCAAGTATATTCACATAGACATGCAACACCGCTGCTAT
AAACATAAGCATTGTGCAAAACATTTCAACTATTTTTTACATAAATAGAAGAATGACATACCAA
ATCAATAACTGCTTGAGCTTCCTTCCTTATGATAGAGAAGTTGCTGCGTGCTAATTCATTTTGT
TCCTTGAGAACCTTTAGAAAGAAAAGGGTAAGGAAAAGGAAATATTCCTATCAAGACACAAAGA
TAATTAATAGAAAGGACCTTTTGAAGACCAAGTTCATCATCATCTCCCTCTTGTTCTTCAAGTA
GTAAGAACCGAAGAACTGGTGGAGGGACATCAGAGTCAAGGGTGCTACGGCAGTACTGAAAATA
ACTTAACAGTAATGCATATTGGCTGCAAAAGAGAATTTAAAGTCAGCATATATTTTGTATGAAA
GAGAATAACGAATGGAACAGAAATGTTTTTAATGATCATAGTCACTAATGATAGGGAAGTTACC
GTCTTCTCAAGGTCTCAGAAGATTCATTTCTTAGTATTGCCATCGTGAGTTTGAACAATAATGA
AGTGCAGGCTGCATTTGACAACTGCTTTGCTGAAATGATGTCAAGGCAAGTAACTGCATCAGAA
TCGGCACCGGTTGGGCATATGAATCTTTCATCCCGCAGTTTCGCCATACAAGTCAATGCCACCT
TGAAAACATCAACATGCATAAAATTACAAGTTTGCAGTAGGCGAGGAACTTTATTAAGAGGTTA
ACACTTGATACAGGCCGATAAACAACAAACTTACATTGGTTAAAATATATGCCATTNTTCACTG
AACAATCTGGAAGATGTTGTGGGCACTTTAATGAAGCGTCAANGGAGCCTNGCAGCANTGCAAT
AGCAATCAGTAAACTGGTACATTTTGACCAGTAAGAGTTTGTATTCTTAGAGAAGGGAGACAAC
ACTCACTCAAACAATAAATGAGAACGATCTTCAAGTAATGACATCCTTCTAGATACTGCTATCT
GTAATTAGAGAAAAATAGCAGCGATCTACATAAAAATTCGCACCCTAAGAAAAGCTAAGCAGAC
AAACAAACAAAAGACTAACTTCAACAATTTGAGACCAGCCAGTCAACATGTGAAGCTGGGCTGC
TTGTTCTTCAAGATTTTTGTTATATCTCCAGGCCCATTTCAGCATCTGATGGAATGATTCTTTT
AGCTCGCTTTTCTCAGATTCACTTAATTGTGGGTTCAATAACTGAGACATCTGTAATAAAAGAA
GCAATCCATAAAAAAAACCATAGGAAACATAAAAGTGTAATAACAACGAATAAGGCTGAAAAAA
TGACCTGGAGAAGTTTTTCATGAAATGCATCAAGATCAATCAATCTATCGCCTCGCTCTGAATA
ATAATATACACCACCAAATTCAGATGTCGCGGAATTCCTTAGGATCTCTTCAATCTATTAGCAG
AAAGAATCAGATGATAACTAATCGAACTTAAAACGTTGATGTTTAAAGGGCAGACCTTTGATTC
AAGTCTCAGGTTAGAAAGCATCTGGGGGTATTTAATGGAAGTGTCCGGACATCTGAACTGGACA
ACTTCAAGCAAATCCAAAAC
Conservation Information
Conserved circRNAs osa_circ_013718*
PMCS
Functional Information
Coding potential Y
Potential coding position 6614738-6611582(-)
6614751-6611874(+)
Potential amino acid sequence MLSNLRLESKIEEILRNSATSEFGGVYYYSERGDRLIDLDAFHEKLLQMSQLLNPQLSESEKSE
LKESFHQMLKWAWRYNKNLEEQAAQLHMLTGWSQIVEVALTCMAKLRDERFICPTGADSDAVTC
LDIISAKQLSNAACTSLLFKLTMAILRNESSETLRRRQYALLLSYFQYCRSTLDSDVPPPVLRF
LLLEEQEGDDDELGLQKVLKEQNELARSNFSIIRKEAQAVIDLVAKDAIHGSEAGKAISFYVLD
SLISIDHDKYFLNQIQSRGILRSCLSDVNNYLSKEASFSSESSQRFCTIDAQLSLLLRISHHYG
KHGSQILLSMGALHNLSSCNLMGSQKKVDSVSVTNANSRLNSNVVKEQAGEIDKRRSLTAPILR
IVTSFTSLVDSADFLEVLDLLEVVQFRCPDTSIKYPQMLSNLRLESKIEEILRNSATSEFGGVY
YYSERGDRLIDLDAFHEKLLQMSQLLNPQLSESEKSELKESFHQMLKWAWRYNKNLEEQAAQLH
MLTGWSQIVEVALTCMAKLRDERFICPTGADSDAVTCLDIISAKQLSNAACTSLLFKLTMAILR
NESSETLRRRQYALLLSYFQYCRSTLDSDVPPPVLRFLLLEEQEGDDDELGLQKVLKEQNELAR
SNFSIIRKEAQAVIDLVAKDAIHGSEAGKAISFYVLDSLISIDHDKYFLNQIQSRGILRSCLSD
VNNYLSKEASFSSESSQRFCTIDAQLSLLLRISHHYGKHGSQILLSMGALHNLSSCNLMGSQKK
VDSVSVTNANSRLNSNVVKEQAGEIDKRRSLTAPILRIVTSFTSLVDSADFLEVLDLLEVVQFR
CPDTSIKYPQMLSNLRLESKIEEILRNSATSEFGGVYYYSERGDRLIDLDAFHEKLLQMSQLLN
PQLSESEKSELKESFHQMLKWAWRYNKNLEEQAAQLHMLTGWSQIVEVALTCMAKLRDERFICP
TGADSDAVTCLDIISAKQLSNAACTSLLFKLTMAILRNESSETLRRRQYALLLSYFQYCRSTLD
SDVPPPVLRFLLLEEQEGDDDELGLQKVLKEQNELARSNFSIIRKEAQAVIDLVAKDAIHGSEA
GKAISFYVLDSLISIDHDKYFLNQIQSRGILRSCLSDVNNYLSKEASFSSESSQRFCTIDAQLS
LLLRISHHYGKHGSQILLSMGALHNLSSCNLMGSQKKVDSVSVTNANSRLNSNVVKEQAGEIDK
RRSLTAPILRIVTSFTSLVDSADFLEVLDLLEVVQFRCPDTSIKYPQMLSNLRLESKIEEILRN
SATSEFGGVYYYSERGDRLIDLDAFHEKLLQMSQLLNPQLSESEKSELKESFHQMLKWAWRYNK
NLEEQAAQLHMLTGWSQIVEVALTCMAKLRDERFICPTGADSDAVTCLDIISAKQLSNAACTSL
LFKLTMAILRNESSETLRRRQYALLLSYFQYCRSTLDSDVPPPVLRFLLLEEQEGDDDELGLQK
VLKEQNELARSNFSIIRKEAQAVIDLVAKDAIHGSEAGKAISFYVLDSLISIDHDKYFLNQIQS
RGILRSCLSDVNNYLSKEASFSSESSQRFCTIDAQLSLLLRISHHYGKHGSQILLSMGALHNLS
SCNLMGSQKKVDSVSVTNANSRLNSNVVKEQAGEIDKRRSLTAPILRIVTSFTSLVDSADFLE(
-)
MEVSGHLNWTTSSKSKTSRKSAESTSEVKDVTILSIGAVSDLLLSISPACSFTTLELSLEFALV
TETESTFFCEPIRLHDERLCRAPMDNRIWEPCFP*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021