Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA006922_circ_g.7 |
ID in PlantcircBase | osi_circ_003734 |
Alias | 2:6611580|6614799 |
Organism | Oryza sativa ssp. indica |
Position | chr2: 6611580-6614799 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA006922 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA006922_circ_g.6 BGIOSGA006922_circ_g.8 BGIOSGA006922_circ_g.9 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA006922-TA:9 |
Conservation Information | |
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Conserved circRNAs | osa_circ_013718* |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6614738-6611582(-) 6614751-6611874(+) |
Potential amino acid sequence |
MLSNLRLESKIEEILRNSATSEFGGVYYYSERGDRLIDLDAFHEKLLQMSQLLNPQLSESEKSE LKESFHQMLKWAWRYNKNLEEQAAQLHMLTGWSQIVEVALTCMAKLRDERFICPTGADSDAVTC LDIISAKQLSNAACTSLLFKLTMAILRNESSETLRRRQYALLLSYFQYCRSTLDSDVPPPVLRF LLLEEQEGDDDELGLQKVLKEQNELARSNFSIIRKEAQAVIDLVAKDAIHGSEAGKAISFYVLD SLISIDHDKYFLNQIQSRGILRSCLSDVNNYLSKEASFSSESSQRFCTIDAQLSLLLRISHHYG KHGSQILLSMGALHNLSSCNLMGSQKKVDSVSVTNANSRLNSNVVKEQAGEIDKRRSLTAPILR IVTSFTSLVDSADFLEVLDLLEVVQFRCPDTSIKYPQMLSNLRLESKIEEILRNSATSEFGGVY YYSERGDRLIDLDAFHEKLLQMSQLLNPQLSESEKSELKESFHQMLKWAWRYNKNLEEQAAQLH MLTGWSQIVEVALTCMAKLRDERFICPTGADSDAVTCLDIISAKQLSNAACTSLLFKLTMAILR NESSETLRRRQYALLLSYFQYCRSTLDSDVPPPVLRFLLLEEQEGDDDELGLQKVLKEQNELAR SNFSIIRKEAQAVIDLVAKDAIHGSEAGKAISFYVLDSLISIDHDKYFLNQIQSRGILRSCLSD VNNYLSKEASFSSESSQRFCTIDAQLSLLLRISHHYGKHGSQILLSMGALHNLSSCNLMGSQKK VDSVSVTNANSRLNSNVVKEQAGEIDKRRSLTAPILRIVTSFTSLVDSADFLEVLDLLEVVQFR CPDTSIKYPQMLSNLRLESKIEEILRNSATSEFGGVYYYSERGDRLIDLDAFHEKLLQMSQLLN PQLSESEKSELKESFHQMLKWAWRYNKNLEEQAAQLHMLTGWSQIVEVALTCMAKLRDERFICP TGADSDAVTCLDIISAKQLSNAACTSLLFKLTMAILRNESSETLRRRQYALLLSYFQYCRSTLD SDVPPPVLRFLLLEEQEGDDDELGLQKVLKEQNELARSNFSIIRKEAQAVIDLVAKDAIHGSEA GKAISFYVLDSLISIDHDKYFLNQIQSRGILRSCLSDVNNYLSKEASFSSESSQRFCTIDAQLS LLLRISHHYGKHGSQILLSMGALHNLSSCNLMGSQKKVDSVSVTNANSRLNSNVVKEQAGEIDK RRSLTAPILRIVTSFTSLVDSADFLEVLDLLEVVQFRCPDTSIKYPQMLSNLRLESKIEEILRN SATSEFGGVYYYSERGDRLIDLDAFHEKLLQMSQLLNPQLSESEKSELKESFHQMLKWAWRYNK NLEEQAAQLHMLTGWSQIVEVALTCMAKLRDERFICPTGADSDAVTCLDIISAKQLSNAACTSL LFKLTMAILRNESSETLRRRQYALLLSYFQYCRSTLDSDVPPPVLRFLLLEEQEGDDDELGLQK VLKEQNELARSNFSIIRKEAQAVIDLVAKDAIHGSEAGKAISFYVLDSLISIDHDKYFLNQIQS RGILRSCLSDVNNYLSKEASFSSESSQRFCTIDAQLSLLLRISHHYGKHGSQILLSMGALHNLS SCNLMGSQKKVDSVSVTNANSRLNSNVVKEQAGEIDKRRSLTAPILRIVTSFTSLVDSADFLE( -) MEVSGHLNWTTSSKSKTSRKSAESTSEVKDVTILSIGAVSDLLLSISPACSFTTLELSLEFALV TETESTFFCEPIRLHDERLCRAPMDNRIWEPCFP*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |