Detail information of Os05g0363500_circ_igg.1


General Information
CircRNA Name Os05g0363500_circ_igg.1
ID in PlantcircBase osa_circ_027631
Alias NA
Organism Oryza sativa
Position chr5: 17362876-17367218  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os05g0363500_circ_g.1 Os05g0363500_circ_igg.2 Os05g0363500_circ_g.3 Os05g0363500_circ_g.4 Os05g0363500_circ_g.5 Os05g0363500_circ_igg.6 Os05g0363500_circ_g.7 Os05g0363500_circ_igg.8 Os05g0363500_circ_g.9 Os05g0363500_circ_g.10 Os05g0363500_circ_g.11
Support reads 1
Tissues shoot
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCATATAAACACTTGTACAGAAAGCATAACAACTTACCTCTGAAAACTCCGGCCATTTCGGA
ATGACAGAGCTCACAGATCTTCCAAACTGAATGCACcttaagaacgttgttcggtgtaagcaca
atgattttgtcattgtaaatttcaaattgctccacagcttctcttatttgaattacctctacac
attcgagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAAGAACGTTGTTCGGTGTAAGCACAATGATTTTGTCATTGTAAATTTCAAATTGCTCCACA
GCTTCTCTTATTTGAATTACCTCTACACATTCGAGCTTGCGTTGCGCCATTTTCCATACCTGCA
AAGAGCCTATCATTAGCTATTAACTTATTACAGTTACTTCTTTGTGGTTGAAAACTGGTCCGCC
CGTTTCTTACTCTAATTGACTTGTCAGCTGACCCGCTCAAGAGATTTTCTCCAGTGTCTGATAG
TGCAAAACATGTAACTGCTCTCTTGTGCTCTTTAACCTCTCTTATGACTACTGCTCTTTGGCCT
TTTATATCCCATGCCTGTAGAGGATCACTTGAGAATCAGGAATTGTAATTATGCAAGTACATCT
TTCATGAACTGAAGAAATACCCCTTTTTTTTGCATTTTGCTGCCCAACCAACTATTGCTATGTT
AAAATATGTGTGCTTATGTTGTGGATTTACGAGTGATTACTGATTAGAAACTCTAATGCACATA
CACATGCCATGTATCATTACCCTGATGGTGCCACTAGAATAACCAACAAAGAGCTGCCCTCCGA
AGAATATTATAGCGGTTGCTGCTCCATTGCCAGGTTGACCGATTTCCAATATCTGTGTATGAAC
ACATGATACACGCTGCACTGACAACTTCAGATAATTAGATTTCGTGTAAAATGATGTTCCAAAA
GTAAGGACCCTGTGCAAGTGATAATTATAATCTTAAATGAACTGGTATACTTTTGTATTTCTTT
TTTCTATTACTTAACTAAGTTTAGAAGATGTTCATTGTGTTTAAGGGAGAACATGAATGGCCAA
GATTTCACATTATTTGTGGTTCAGAAAGGAAGAGAAAAGAAAAGTGGAAAGGAGTTAGATTTGA
ACAATACTCACTGGCTTGCTGGGAAGATAATAATCTGTAACTTGAAGCAACTCTTCAGCCATCC
ATGTGAATGATGACAGCCTCCTTAGAGATTCTCGTGAACCCTCTGACAAGCCCATCAACTTCTG
CTTCCCTGCAGGTACCAAAAAACATTTTTGTAAAAAGAATTATATATTTCTTTGATTATCCTTT
TGTGACACGTTTGTAAAATTGGTCTTGACATTCTAAAATATTCATGGTTTTAGTTGGTCAGTTC
TCGACCAAACCACTGAACTCGATGGCTATAACTTGGCAGTAATGGAATCTCTTTACCTTTTCCA
GAGGTGTAAGTGTAGAGAGACATGCATGCTAGAAGTCTTTCATCAAGCTCAAACCCTGGGTGCA
AGTGTCTGGCTATGTCATGTAACAAGATCTCGCAAGCAGAATATCTCATGTTATTTTCACCGAG
AGCAGCCAGCTCGCTTCCAAGCCATGCAGCACATACAAGGCAATCATGCGAGGTTCCCTTCGCC
TTGCTTTGTATTCCTTTGGCCAAAGCACGGAGAACTGGTACTCCTGTTCTGATAATTGTCCGTG
CAGATTTACTGCTCCATGGACCTATTTCTGTGTCCTGCATCATATTTTACTCTGGAGTGTTAAC
TACGGTTAAGATAATTATCTTGTCCAAATTAGATAGTGTTTTCATACTTCACCTGCAGGCAAGG
ATCAACCCAGTCGATATTTCTGATCATATTTCTGTGAGATGTTGATGTGAGTCCTGCTTTCTTT
GCGAGCCATGCAGCAGTATATGATTCCCCTGACCAGGAATAAGTTCCTCCTAGATTACAAAGGA
AAGATGCTGCTAATGCCTGAACGGTGCAGTTTTCTTGGGATGATAGGGAATCCAACAGGACTTC
CATTGCTTCATCCCTGAATACACTTTTACCATCTGGTTTGTCCTACAGGAGCAGATCATTTTTT
AGATAATGTGAGATCATTCCTTTATCTAAAATGATAATGTGAGATCACTGCAATGCTGTGTTTG
TTGAACTGTTGCTAGTATGTATTCATAGGAATGGTTAATAATCAGTGCTTTCATTTTATTCGAG
GTGATATTTAAAGTTGTCCTAATGAGCTGCAGACAATCTGGTTGTATTTGCAGGGCTCTAAATG
AAAATTCTTCAGAGGAGTACCAGGGACAGTAGACATACCAGCATATCCAATTGGAGAAGAAGAT
TAGCTGCTAAAACCCTGTGTTCAGGTTCAGTTTGATGGAGGCAGGCCATCAATGTATGCATAAT
GGCAATGCCTCCTAGCTTCTTTATTTCTTGCAGCAGGGAGTTCGCTGCAGACCTGAAGGTTCAC
ACAATTCAACAAGCTATTCGGAATTAACAAAATGGACCTTTTCAAGTTATGGAATGTACCGAGG
AATTTGAAGAATCTCATGGAAGTATTCAAGAGCGGCACACTTGGCACGGTGTTCTTTTCGTCTT
ACAAGGTGAAGGAACGGTTCCACTGGAGTAGCCTGTGACAAGAACTTCTTGCAGTTTCCATTAA
GCCGTACACACCTGACGAGAATAGCTGCCAGGGCCACACCTTCTTCCAAGTTGTTATTCTTTGC
AACATCAACAAGCTTAGATAGAATATGAGGAGAGCTGATGGCACCCAAGTGGACGTTGTTTGTT
ACATAGTCGAATGCTGTCACCAAGATCTCAATGAGTGCTATTGATGCTGATGTCGGGGTCAATG
GAAGCACCGCAGGCCACTTTTTGGTGTCTGAATTACAAGCAACATGTAGAAGTGAAGGTAACAA
CTCTAAGTTTTTGATCTGTAAAGGTGAAGGATCCAACAAGTATATCAAAATGGCTGCCTCATGC
ACATCTCTCTTCAATGCACTGGCTAGATTGGATAAATGGAACTCCTTTCTCTTGATGCCTCTCA
TTGCATTCCTATCTTCAGATAGCATAAGCAGGAGAACATAAACTGATGCCCTGATCACTTTATC
CTTTTTAGATGTCGAAATGCTGTCAAGAAGTTGGTCGAGGATGTCTTGCCGTGCTGATGATTTG
TATCTCACCTCAGAAGAACTATTCAGCAAGTGCCATATGGTTGTAACTTCCGAACCTGCATCCA
GGTAGCTCTCTAGCCCATCTGAAACCAGTAATTTCGACACCGCCTTCTCAAACCTCTCAAGAAA
GTCTACCTGGCTTTCCTTCCCCCAGCGTGAGCTGACATCGCTCCACTCATCACTCTGTGAGAAA
GCCTTGAATTTCCTGCTCATGCTTCCTCGGGAGACTATGTCAGATAGAGCACTTCTCTTCATAA
ATTTGGTTGAGAAGTTGCTGAAGCATCTGAGATCATGCTTTGGCGTGCATTGTGGAAACATGCC
ATCCTTGTTGAAATAGTTGGATGTTGAGTATGAGTCTGCTTTATTTATATTTAGGACTGAATTC
GATAGACTATTCGCTGAGCACTGCGATCTGCTCGATTGTAGGTCGTTTTGTTTCATATCACAGT
CATCAACTTGGTAGAGTGGAGATTCAGGAGTGTAAATCATTGCATTTTCAGGAGAAGTGCACCA
TGTCAGATTCTTATTCTGAATTGATCTAACAAATATACCGAAGAAAAAAAAAAGTTAGGACAAT
ATGGGAAACAGTAGATCAGATGGTGTCGGATATAGTACCTTCCATGGAGTTTAGTTGACAAGAA
AACTGTATCAATAGGCATAACCTTTGCTGACCTCCCTTTGTCATGTGAAACCTCCTACGTTAGA
TGAATTAAATGTCAAAAACTCAAAGGCTCTTCCAGCGTACATTAATTTTGATATTAAAGGTATG
CTTTATCCCCCATGCATTATTGTTGCAAACTGCATAGTCTGAGTAGTCTCTATTTACAAACTTT
AGGTGAGGGTTTCAGTTAAATTTGCTGAAAATAAAAGAAGAGGTATGATTATCATTTTCCTACA
TAGTCCTGGATCAACTAAAACTTTTGGACTTCCAAATTGTGTTATGACAATTTGCAAAATTTTC
AACAGTTTTAGAATTTGAACATGTATTACCTCGTTGTCACTTTCTTCACTAGAATCAAGGTGTG
AGTAGAAGGAAACAGGTGAATCTGACTGGTATTCCTCAAGCATTTCATGTAGGCACCTGCTGTC
AGAGCTCCCCTTGGTATCTTCTTGAAGGTCTGGATCCTCACAGTTGAGAAAATCCTTCAGCTCA
GCGAAGCTATCATGATCGCCACAGTTGGAGTCGAAGGCTCTGCACTTTTCTTCTTGATCAATTG
AGTGGATTGTCCCATCCTGTGCAAATGACAAATTCACTTGAGCTCCCAAATGCAGGTCTGAATT
CCTCTGTAATAGTAGATTGCATCATATAAACACTTGTACAGAAAGCATAACAACTTACCTCTGA
AAACTCCGGCCATTTCGGAATGACAGAGCTCACAGATCTTCCAAACTGAATGCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.153522653
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017