Plant Circular RNA Database

Detail information of Os05g0363500_circ_g.7

			
						 General Information
					
						CircRNA Name
						Os05g0363500_circ_g.7
					
						ID in PlantcircBase
						osa_circ_027638
					
						Alias
						Os_ciR2195
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 17365175-17366356  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os05g0363500						
					
						Parent gene annotation
						
							Hypothetical conserved gene. (Os05t0363500-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os05g0363500_circ_igg.1 Os05g0363500_circ_g.1 Os05g0363500_circ_igg.2 Os05g0363500_circ_g.3 Os05g0363500_circ_g.4 Os05g0363500_circ_g.5 Os05g0363500_circ_igg.6 Os05g0363500_circ_igg.8 Os05g0363500_circ_g.9 Os05g0363500_circ_g.10 Os05g0363500_circ_g.11 						
					
						Support reads
						6/1
					
						Tissues
						root/shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0363500-01:1

General Information
CircRNA Name	Os05g0363500_circ_g.7
ID in PlantcircBase	osa_circ_027638
Alias	Os_ciR2195
Organism	Oryza sativa
Position	chr5: 17365175-17366356 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os05g0363500
Parent gene annotation	Hypothetical conserved gene. (Os05t0363500-01)
Parent gene strand	-
Alternative splicing	Os05g0363500_circ_igg.1 Os05g0363500_circ_g.1 Os05g0363500_circ_igg.2 Os05g0363500_circ_g.3 Os05g0363500_circ_g.4 Os05g0363500_circ_g.5 Os05g0363500_circ_igg.6 Os05g0363500_circ_igg.8 Os05g0363500_circ_g.9 Os05g0363500_circ_g.10 Os05g0363500_circ_g.11
Support reads	6/1
Tissues	root/shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0363500-01:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CATATCACAGTCATCAACTTGGTAGAGTGGAGATTCAGGAGTGTAAATCATTGCATTTTCAGGA
GAAGTGCACCATGTCAGATTCTTATTCTGAATTGATcgaggaatttgaagaatctcatggaagt
attcaagagcggcacacttggcacggtgttcttttcgtcttacaaggtgaaggaacggttccac
tggagtag

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1182
Transcript exons: 17365175-17366356
CGAGGAATTTGAAGAATCTCATGGAAGTATTCAAGAGCGGCACACTTGGCACGGTGTTCTTTTC
GTCTTACAAGGTGAAGGAACGGTTCCACTGGAGTAGCCTGTGACAAGAACTTCTTGCAGTTTCC
ATTAAGCCGTACACACCTGACGAGAATAGCTGCCAGGGCCACACCTTCTTCCAAGTTGTTATTC
TTTGCAACATCAACAAGCTTAGATAGAATATGAGGAGAGCTGATGGCACCCAAGTGGACGTTGT
TTGTTACATAGTCGAATGCTGTCACCAAGATCTCAATGAGTGCTATTGATGCTGATGTCGGGGT
CAATGGAAGCACCGCAGGCCACTTTTTGGTGTCTGAATTACAAGCAACATGTAGAAGTGAAGGT
AACAACTCTAAGTTTTTGATCTGTAAAGGTGAAGGATCCAACAAGTATATCAAAATGGCTGCCT
CATGCACATCTCTCTTCAATGCACTGGCTAGATTGGATAAATGGAACTCCTTTCTCTTGATGCC
TCTCATTGCATTCCTATCTTCAGATAGCATAAGCAGGAGAACATAAACTGATGCCCTGATCACT
TTATCCTTTTTAGATGTCGAAATGCTGTCAAGAAGTTGGTCGAGGATGTCTTGCCGTGCTGATG
ATTTGTATCTCACCTCAGAAGAACTATTCAGCAAGTGCCATATGGTTGTAACTTCCGAACCTGC
ATCCAGGTAGCTCTCTAGCCCATCTGAAACCAGTAATTTCGACACCGCCTTCTCAAACCTCTCA
AGAAAGTCTACCTGGCTTTCCTTCCCCCAGCGTGAGCTGACATCGCTCCACTCATCACTCTGTG
AGAAAGCCTTGAATTTCCTGCTCATGCTTCCTCGGGAGACTATGTCAGATAGAGCACTTCTCTT
CATAAATTTGGTTGAGAAGTTGCTGAAGCATCTGAGATCATGCTTTGGCGTGCATTGTGGAAAC
ATGCCATCCTTGTTGAAATAGTTGGATGTTGAGTATGAGTCTGCTTTATTTATATTTAGGACTG
AATTCGATAGACTATTCGCTGAGCACTGCGATCTGCTCGATTGTAGGTCGTTTTGTTTCATATC
ACAGTCATCAACTTGGTAGAGTGGAGATTCAGGAGTGTAAATCATTGCATTTTCAGGAGAAGTG
CACCATGTCAGATTCTTATTCTGAATTGAT
						
					

						Genomic sequence
						
							CGAGGAATTTGAAGAATCTCATGGAAGTATTCAAGAGCGGCACACTTGGCACGGTGTTCTTTTC
GTCTTACAAGGTGAAGGAACGGTTCCACTGGAGTAGCCTGTGACAAGAACTTCTTGCAGTTTCC
ATTAAGCCGTACACACCTGACGAGAATAGCTGCCAGGGCCACACCTTCTTCCAAGTTGTTATTC
TTTGCAACATCAACAAGCTTAGATAGAATATGAGGAGAGCTGATGGCACCCAAGTGGACGTTGT
TTGTTACATAGTCGAATGCTGTCACCAAGATCTCAATGAGTGCTATTGATGCTGATGTCGGGGT
CAATGGAAGCACCGCAGGCCACTTTTTGGTGTCTGAATTACAAGCAACATGTAGAAGTGAAGGT
AACAACTCTAAGTTTTTGATCTGTAAAGGTGAAGGATCCAACAAGTATATCAAAATGGCTGCCT
CATGCACATCTCTCTTCAATGCACTGGCTAGATTGGATAAATGGAACTCCTTTCTCTTGATGCC
TCTCATTGCATTCCTATCTTCAGATAGCATAAGCAGGAGAACATAAACTGATGCCCTGATCACT
TTATCCTTTTTAGATGTCGAAATGCTGTCAAGAAGTTGGTCGAGGATGTCTTGCCGTGCTGATG
ATTTGTATCTCACCTCAGAAGAACTATTCAGCAAGTGCCATATGGTTGTAACTTCCGAACCTGC
ATCCAGGTAGCTCTCTAGCCCATCTGAAACCAGTAATTTCGACACCGCCTTCTCAAACCTCTCA
AGAAAGTCTACCTGGCTTTCCTTCCCCCAGCGTGAGCTGACATCGCTCCACTCATCACTCTGTG
AGAAAGCCTTGAATTTCCTGCTCATGCTTCCTCGGGAGACTATGTCAGATAGAGCACTTCTCTT
CATAAATTTGGTTGAGAAGTTGCTGAAGCATCTGAGATCATGCTTTGGCGTGCATTGTGGAAAC
ATGCCATCCTTGTTGAAATAGTTGGATGTTGAGTATGAGTCTGCTTTATTTATATTTAGGACTG
AATTCGATAGACTATTCGCTGAGCACTGCGATCTGCTCGATTGTAGGTCGTTTTGTTTCATATC
ACAGTCATCAACTTGGTAGAGTGGAGATTCAGGAGTGTAAATCATTGCATTTTCAGGAGAAGTG
CACCATGTCAGATTCTTATTCTGAATTGAT
						
					

			
		

Sequences
Splice junction sequence	CATATCACAGTCATCAACTTGGTAGAGTGGAGATTCAGGAGTGTAAATCATTGCATTTTCAGGA GAAGTGCACCATGTCAGATTCTTATTCTGAATTGATcgaggaatttgaagaatctcatggaagt attcaagagcggcacacttggcacggtgttcttttcgtcttacaaggtgaaggaacggttccac tggagtag
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1182 Transcript exons: 17365175-17366356 CGAGGAATTTGAAGAATCTCATGGAAGTATTCAAGAGCGGCACACTTGGCACGGTGTTCTTTTC GTCTTACAAGGTGAAGGAACGGTTCCACTGGAGTAGCCTGTGACAAGAACTTCTTGCAGTTTCC ATTAAGCCGTACACACCTGACGAGAATAGCTGCCAGGGCCACACCTTCTTCCAAGTTGTTATTC TTTGCAACATCAACAAGCTTAGATAGAATATGAGGAGAGCTGATGGCACCCAAGTGGACGTTGT TTGTTACATAGTCGAATGCTGTCACCAAGATCTCAATGAGTGCTATTGATGCTGATGTCGGGGT CAATGGAAGCACCGCAGGCCACTTTTTGGTGTCTGAATTACAAGCAACATGTAGAAGTGAAGGT AACAACTCTAAGTTTTTGATCTGTAAAGGTGAAGGATCCAACAAGTATATCAAAATGGCTGCCT CATGCACATCTCTCTTCAATGCACTGGCTAGATTGGATAAATGGAACTCCTTTCTCTTGATGCC TCTCATTGCATTCCTATCTTCAGATAGCATAAGCAGGAGAACATAAACTGATGCCCTGATCACT TTATCCTTTTTAGATGTCGAAATGCTGTCAAGAAGTTGGTCGAGGATGTCTTGCCGTGCTGATG ATTTGTATCTCACCTCAGAAGAACTATTCAGCAAGTGCCATATGGTTGTAACTTCCGAACCTGC ATCCAGGTAGCTCTCTAGCCCATCTGAAACCAGTAATTTCGACACCGCCTTCTCAAACCTCTCA AGAAAGTCTACCTGGCTTTCCTTCCCCCAGCGTGAGCTGACATCGCTCCACTCATCACTCTGTG AGAAAGCCTTGAATTTCCTGCTCATGCTTCCTCGGGAGACTATGTCAGATAGAGCACTTCTCTT CATAAATTTGGTTGAGAAGTTGCTGAAGCATCTGAGATCATGCTTTGGCGTGCATTGTGGAAAC ATGCCATCCTTGTTGAAATAGTTGGATGTTGAGTATGAGTCTGCTTTATTTATATTTAGGACTG AATTCGATAGACTATTCGCTGAGCACTGCGATCTGCTCGATTGTAGGTCGTTTTGTTTCATATC ACAGTCATCAACTTGGTAGAGTGGAGATTCAGGAGTGTAAATCATTGCATTTTCAGGAGAAGTG CACCATGTCAGATTCTTATTCTGAATTGAT
Genomic sequence	CGAGGAATTTGAAGAATCTCATGGAAGTATTCAAGAGCGGCACACTTGGCACGGTGTTCTTTTC GTCTTACAAGGTGAAGGAACGGTTCCACTGGAGTAGCCTGTGACAAGAACTTCTTGCAGTTTCC ATTAAGCCGTACACACCTGACGAGAATAGCTGCCAGGGCCACACCTTCTTCCAAGTTGTTATTC TTTGCAACATCAACAAGCTTAGATAGAATATGAGGAGAGCTGATGGCACCCAAGTGGACGTTGT TTGTTACATAGTCGAATGCTGTCACCAAGATCTCAATGAGTGCTATTGATGCTGATGTCGGGGT CAATGGAAGCACCGCAGGCCACTTTTTGGTGTCTGAATTACAAGCAACATGTAGAAGTGAAGGT AACAACTCTAAGTTTTTGATCTGTAAAGGTGAAGGATCCAACAAGTATATCAAAATGGCTGCCT CATGCACATCTCTCTTCAATGCACTGGCTAGATTGGATAAATGGAACTCCTTTCTCTTGATGCC TCTCATTGCATTCCTATCTTCAGATAGCATAAGCAGGAGAACATAAACTGATGCCCTGATCACT TTATCCTTTTTAGATGTCGAAATGCTGTCAAGAAGTTGGTCGAGGATGTCTTGCCGTGCTGATG ATTTGTATCTCACCTCAGAAGAACTATTCAGCAAGTGCCATATGGTTGTAACTTCCGAACCTGC ATCCAGGTAGCTCTCTAGCCCATCTGAAACCAGTAATTTCGACACCGCCTTCTCAAACCTCTCA AGAAAGTCTACCTGGCTTTCCTTCCCCCAGCGTGAGCTGACATCGCTCCACTCATCACTCTGTG AGAAAGCCTTGAATTTCCTGCTCATGCTTCCTCGGGAGACTATGTCAGATAGAGCACTTCTCTT CATAAATTTGGTTGAGAAGTTGCTGAAGCATCTGAGATCATGCTTTGGCGTGCATTGTGGAAAC ATGCCATCCTTGTTGAAATAGTTGGATGTTGAGTATGAGTCTGCTTTATTTATATTTAGGACTG AATTCGATAGACTATTCGCTGAGCACTGCGATCTGCTCGATTGTAGGTCGTTTTGTTTCATATC ACAGTCATCAACTTGGTAGAGTGGAGATTCAGGAGTGTAAATCATTGCATTTTCAGGAGAAGTG CACCATGTCAGATTCTTATTCTGAATTGAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.507338684

Conservation Information
Conserved circRNAs	NA
PMCS	0.507338684

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							17366161-17365271(+)
17366309-17365177(-)
						
					

						Potential amino acid sequence
						
							MLSMSLLYLYLGLNSIDYSLSTAICSIVGRFVSYHSHQLGRVEIQECKSLHFQEKCTMSDSYSE
LIEEFEESHGSIQERHTWHGVLFVLQGEGTVPLE*(+)
MIYTPESPLYQVDDCDMKQNDLQSSRSQCSANSLSNSVLNINKADSYSTSNYFNKDGMFPQCTP
KHDLRCFSNFSTKFMKRSALSDIVSRGSMSRKFKAFSQSDEWSDVSSRWGKESQVDFLERFEKA
VSKLLVSDGLESYLDAGSEVTTIWHLLNSSSEVRYKSSARQDILDQLLDSISTSKKDKVIRASV
YVLLLMLSEDRNAMRGIKRKEFHLSNLASALKRDVHEAAILIYLLDPSPLQIKNLELLPSLLHV
ACNSDTKKWPAVLPLTPTSASIALIEILVTAFDYVTNNVHLGAISSPHILSKLVDVAKNNNLEE
GVALAAILVRCVRLNGNCKKFLSQATPVEPFLHLVRRKEHRAKCAALEYFHEILQIPRSIQNKN
LTWCTSPENAMIYTPESPLYQVDDCDMKQNDLQSSRSQCSANSLSNSVLNINKADSYSTSNYFN
KDGMFPQCTPKHDLRCFSNFSTKFMKRSALSDIVSRGSMSRKFKAFSQSDEWSDVSSRWGKESQ
VDFLERFEKAVSKLLVSDGLESYLDAGSEVTTIWHLLNSSSEVRYKSSARQDILDQLLDSISTS
KKDKVIRASVYVLLLMLSEDRNAMRGIKRKEFHLSNLASALKRDVHEAAILIYLLDPSPLQIKN
LELLPSLLHVACNSDTKKWPAVLPLTPTSASIALIEILVTAFDYVTNNVHLGAISSPHILSKLV
DVAKNNNLEEGVALAAILVRCVRLNGNCKKFLSQATPVEPFLHLVRRKEHRAKCAALEYFHEIL
QIPRSIQNKNLTWCTSPENAMIYTPESPLYQVDDCDMKQNDLQSSRSQCSANSLSNSVLNINKA
DSYSTSNYFNKDGMFPQCTPKHDLRCFSNFSTKFMKRSALSDIVSRGSMSRKFKAFSQSDEWSD
VSSRWGKESQVDFLERFEKAVSKLLVSDGLESYLDAGSEVTTIWHLLNSSSEVRYKSSARQDIL
DQLLDSISTSKKDKVIRASVYVLLLMLSEDRNAMRGIKRKEFHLSNLASALKRDVHEAAILIYL
LDPSPLQIKNLELLPSLLHVACNSDTKKWPAVLPLTPTSASIALIEILVTAFDYVTNNVHLGAI
SSPHILSKLVDVAKNNNLEEGVALAAILVRCVRLNGNCKKFLSQATPVEPFLHLVRRKEHRAKC
AALEYFHEILQIPRSIQNKNLTWCTSPENAMIYTPESPLYQVDDCDMKQNDLQSSRSQCSANSL
SNSVLNINKADSYSTSNYFNKDGMFPQCTPKHDLRCFSNFSTKFMKRSALSDIVSRGSMSRKFK
AFSQSDEWSDVSSRWGKESQVDFLERFEKAVSKLLVSDGLESYLDAGSEVTTIWHLLNSSSEVR
YKSSARQDILDQLLDSISTSKKDKVIRASVYVLLLMLSEDRNAMRGIKRKEFHLSNLASALKRD
VHEAAILIYLLDPSPLQIKNLELLPSLLHVACNSDTKKWPAVLPLTPTSASIALIEILVTAFDY
VTNNVHLGAISSPHILSKLVDVAKNNNLEEGVALAAILVRCVRLNGNCKKFLSQATPVEPFLHL
VRRKEHRAKCAALEYFHEILQIP(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	17366161-17365271(+) 17366309-17365177(-)
Potential amino acid sequence	MLSMSLLYLYLGLNSIDYSLSTAICSIVGRFVSYHSHQLGRVEIQECKSLHFQEKCTMSDSYSE LIEEFEESHGSIQERHTWHGVLFVLQGEGTVPLE*(+) MIYTPESPLYQVDDCDMKQNDLQSSRSQCSANSLSNSVLNINKADSYSTSNYFNKDGMFPQCTP KHDLRCFSNFSTKFMKRSALSDIVSRGSMSRKFKAFSQSDEWSDVSSRWGKESQVDFLERFEKA VSKLLVSDGLESYLDAGSEVTTIWHLLNSSSEVRYKSSARQDILDQLLDSISTSKKDKVIRASV YVLLLMLSEDRNAMRGIKRKEFHLSNLASALKRDVHEAAILIYLLDPSPLQIKNLELLPSLLHV ACNSDTKKWPAVLPLTPTSASIALIEILVTAFDYVTNNVHLGAISSPHILSKLVDVAKNNNLEE GVALAAILVRCVRLNGNCKKFLSQATPVEPFLHLVRRKEHRAKCAALEYFHEILQIPRSIQNKN LTWCTSPENAMIYTPESPLYQVDDCDMKQNDLQSSRSQCSANSLSNSVLNINKADSYSTSNYFN KDGMFPQCTPKHDLRCFSNFSTKFMKRSALSDIVSRGSMSRKFKAFSQSDEWSDVSSRWGKESQ VDFLERFEKAVSKLLVSDGLESYLDAGSEVTTIWHLLNSSSEVRYKSSARQDILDQLLDSISTS KKDKVIRASVYVLLLMLSEDRNAMRGIKRKEFHLSNLASALKRDVHEAAILIYLLDPSPLQIKN LELLPSLLHVACNSDTKKWPAVLPLTPTSASIALIEILVTAFDYVTNNVHLGAISSPHILSKLV DVAKNNNLEEGVALAAILVRCVRLNGNCKKFLSQATPVEPFLHLVRRKEHRAKCAALEYFHEIL QIPRSIQNKNLTWCTSPENAMIYTPESPLYQVDDCDMKQNDLQSSRSQCSANSLSNSVLNINKA DSYSTSNYFNKDGMFPQCTPKHDLRCFSNFSTKFMKRSALSDIVSRGSMSRKFKAFSQSDEWSD VSSRWGKESQVDFLERFEKAVSKLLVSDGLESYLDAGSEVTTIWHLLNSSSEVRYKSSARQDIL DQLLDSISTSKKDKVIRASVYVLLLMLSEDRNAMRGIKRKEFHLSNLASALKRDVHEAAILIYL LDPSPLQIKNLELLPSLLHVACNSDTKKWPAVLPLTPTSASIALIEILVTAFDYVTNNVHLGAI SSPHILSKLVDVAKNNNLEEGVALAAILVRCVRLNGNCKKFLSQATPVEPFLHLVRRKEHRAKC AALEYFHEILQIPRSIQNKNLTWCTSPENAMIYTPESPLYQVDDCDMKQNDLQSSRSQCSANSL SNSVLNINKADSYSTSNYFNKDGMFPQCTPKHDLRCFSNFSTKFMKRSALSDIVSRGSMSRKFK AFSQSDEWSDVSSRWGKESQVDFLERFEKAVSKLLVSDGLESYLDAGSEVTTIWHLLNSSSEVR YKSSARQDILDQLLDSISTSKKDKVIRASVYVLLLMLSEDRNAMRGIKRKEFHLSNLASALKRD VHEAAILIYLLDPSPLQIKNLELLPSLLHVACNSDTKKWPAVLPLTPTSASIALIEILVTAFDY VTNNVHLGAISSPHILSKLVDVAKNNNLEEGVALAAILVRCVRLNGNCKKFLSQATPVEPFLHL VRRKEHRAKCAALEYFHEILQIP(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os05g0363500_circ_g.7

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