Detail information of AT1G48090_circ_g.22


General Information
CircRNA Name AT1G48090_circ_g.22
ID in PlantcircBase ath_circ_006247
Alias Ath_circ_FC0687, Ath_circ_FC0688
Organism Arabidpsis thaliana
Position chr1: 17749158-17751766  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT1G48090
Parent gene annotation calcium-dependent lipid-binding family protein
Parent gene strand -
Alternative splicing AT1G48090_circ_g.23 AT1G48090_circ_g.24 AT1G48090_circ_g.25 AT1G48090_circ_g.26 AT1G48090_circ_g.27 AT1G48090_circ_g.28
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G48090.3:10
AT1G48090.4:10
AT1G48090.6:10
AT1G48090.1:10
AT1G48090.5:10
AT1G48090.2:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTACCTGAAGCACAGCAGCAGTTTCCAGCGCAACAGTAGGGCTAACTGCATTACTTCGCTTCAC
AAACTCTAATACACGATCATAACTTTCAGTCCATATctttcctccggaagcaagaactttaaga
agcagaacctcttcaacctgctcatcgcattcattcttgatctgcgggatatgtaggatttaag
aagtcaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTCCTCCGGAAGCAAGAACTTTAAGAAGCAGAACCTCTTCAACCTGCTCATCGCATTCATTC
TTGATCTGCGGGATATGTAGGATTTAAGAAGTCAAGTAAAAAAAAGGAGAAGTTGCTTTCACAG
AATGTCAATGGTTTGTCAATAACCTACGCACGTTCCTAATCAACACGGTATGGCATAAAAATAG
CCTGCTTATAAAAACATGTAGATAGCTGATTATAGCTAACCTTTCCATACAAGTACAACTTCGT
CTCAACCAAAGCACCAGTAATAACAAGATCAGCAGCTTTCATATTCCTGGTCTGAGGTTCATGG
AAGTCACCATCACCATCACTCGTTTGACCAAGTACATCCCCCGACAAAGGAGCCTACAAAAGGA
AAAGATTTTCAGCATTAAGCGAAGACGACCATTGCAGTAAAAGCCCAGAGAAAAGAAGAAAGAG
ATTTTATACACATACAGAAGCTTGATAGGTGGCTTGGACCAGTCCTCTCAGCCAAGCTGCCTTC
TCCTCCCCCTGAAATTCTATGATCCAGGTGCTAGAAGATTCCAGGGCCTGAAGAATGCGGAAGA
TCCATCAGATAAACAGAAATGAAAATACCACAAACAAAGCAAGGTTGTAAAGGAATATGTGTGA
GCTGGCTTTTTTCTCCAGTATAACATCGAAAGCAACTTCAATAAAAGTAAGATCCAGAGAATCA
TAACACTACCATCTTATTGTTCAGGTAGGAAGCCATTCCAAGATTTAGCAAGCATAGCAAGCAT
ACCCAAGTCACCAAGAGCGTATATTGTATTCCCTAGTCAACTTACAGATTTTTCGGTTCTAATC
TAACTCCTATTATTTAAAATAAAGCAGCTTAGCGTACCTTTTTAAGATCTGTTCCCCTTACACC
GACAGCAAGACAGTATGGAGAACCACCAATATTTGCGGGTGGAACCTCGAATACTTGCCTACCA
GCCATGCTGCACACAGAAACTTTATATTTAAACGTCTTAACATATGCAAAAGTCTTTGTAGTAG
AAAAAAGAACTTGACAAAAAAAAAAGAGAGAAAGAAAGTACATAAAAGAAAATAATTAATAAAA
TTAGCACAAACCATAAATAACGTTGATAATCAAGTGACTTCTCTGATTCAAATGTATACAGATA
TAAACCAGATAGAACAAGGCGACAAGATTGCCAAGTAGCAACAGAGTTGCCAATTCCCTGAAAA
AAGTAGATTCCGTGAAAATAAAAAATCAAAGCTAATACAGATCAACCAAACTTAAAAAGTACTT
GTATATTATAATGCATACCTTCCAAACTAAGATTCTAGCATCACTAGCAAGATCTGTAGGACTC
CAAGGTTGGATTCCATCTGGCATGTGATCAACAGGAGCTTGACTGTAGGTTTTCATAGCACCAT
ACAAGATGTCGAACAATTGCATGATCCTCATATATCTTGTTGGAGAGAAATGAACACCAATATT
TGGCACTTGGATCGATATTCTAGTAGATGGGTAACTTGGGTGAGGTACTTTGATCTTCAACAAG
AAATAGATCCGTGTCAAGTAGAAATGCCTTGTTGTCGCAATTGACTCTTAAAAATAAAATATCA
CGCAAGGTAATACCTGATCAACAATAACTGCCATTCCACACCTATCAATAAGGGAATAAACATT
GTCCGCTTTCTCTAGAATGGGAGACAGAATTGGCTGATTAGTGAAATCTTCCATGACTAAACTG
CAACCTTGGTTGTCAGATCCACAGTCTGTAAAGAAAGCAGCAATATCTCTTCCCGAAATGCAGA
ACCGGGAATATAAGTTTTGCCTCTGCTCCTCAGACCGAGTATCCTGCAATAGTACAAGAAATAT
AAGAAAACAGAAAAGAAAAACTAGTAAACTCGAAGGGCTAGTCTAGAAACTTACCATGGTGGTT
AACGTAAAATTACCAAAATCCAATAGGAAATGGCTACTGCACTTGGACGATCCTGAAGCCCTCA
AAGGAATTCTCACCTTTGGAGCATCAATATCAATGTCGAGAGCAAATCTAAGAAACCAAAGGCA
AAGTATAAAGGAAAGCTGGTGATGCAACTTGTAAACAATGATAAAATAATTAGATCTAATCCCC
AACAGACTACAGGGACAGAAGATTGTGTTCCATGCAACAAACATTCCACTCTAGTCACTCACTA
CCAAATGGTCCAACTCTGATCATATGGACAAAGATAAAAAAAAAAGGATATATAAAGTCCAGTT
AAACTGTTCTAACCTGCTTTGCTCCTCCAATACTATTTGAAGTTGCTCTTGAGCCCGTCGAGTC
ACTTCCTCTAGTTTCATCTGTAATTACCGGTGCAAATAAAATTAAATGCTATGGTACGTATGCA
GGAAAATAAACATACAATAATCTATGAATGATCAACCTTGAAGGATCATACATGTCTTATTTTC
ACCATGACAATATAAGCAAAAAAAACTATGTAAGAAACAGGGTAAGAGTAGGAAAATTTCCACT
AAGCATTAGACCAGTACCTGAAGCACAGCAGCAGTTTCCAGCGCAACAGTAGGGCTAACTGCAT
TACTTCGCTTCACAAACTCTAATACACGATCATAACTTTCAGTCCATAT
Conservation Information
Conserved circRNAs NA
PMCS 0.137153599
Functional Information
Coding potential Y
Potential coding position 17751479-17749160(-)
Potential amino acid sequence MKLEEVTRRAQEQLQIVLEEQSRFALDIDIDAPKVRIPLRASGSSKCSSHFLLDFGNFTLTTMD
TRSEEQRQNLYSRFCISGRDIAAFFTDCGSDNQGCSLVMEDFTNQPILSPILEKADNVYSLIDR
CGMAVIVDQIKVPHPSYPSTRISIQVPNIGVHFSPTRYMRIMQLFDILYGAMKTYSQAPVDHMP
DGIQPWSPTDLASDARILVWKGIGNSVATWQSCRLVLSGLYLYTFESEKSLDYQRYLCMAGRQV
FEVPPANIGGSPYCLAVGVRGTDLKKALESSSTWIIEFQGEEKAAWLRGLVQATYQASAPLSGD
VLGQTSDGDGDFHEPQTRNMKAADLVITGALVETKLYLYGKIKNECDEQVEEVLLLKVLASGGK
IWTESYDRVLEFVKRSNAVSPTVALETAAVLQMKLEEVTRRAQEQLQIVLEEQSRFALDIDIDA
PKVRIPLRASGSSKCSSHFLLDFGNFTLTTMDTRSEEQRQNLYSRFCISGRDIAAFFTDCGSDN
QGCSLVMEDFTNQPILSPILEKADNVYSLIDRCGMAVIVDQIKVPHPSYPSTRISIQVPNIGVH
FSPTRYMRIMQLFDILYGAMKTYSQAPVDHMPDGIQPWSPTDLASDARILVWKGIGNSVATWQS
CRLVLSGLYLYTFESEKSLDYQRYLCMAGRQVFEVPPANIGGSPYCLAVGVRGTDLKKALESSS
TWIIEFQGEEKAAWLRGLVQATYQASAPLSGDVLGQTSDGDGDFHEPQTRNMKAADLVITGALV
ETKLYLYGKIKNECDEQVEEVLLLKVLASGGKIWTESYDRVLEFVKRSNAVSPTVALETAAVLQ
MKLEEVTRRAQEQLQIVLEEQSRFALDIDIDAPKVRIPLRASGSSKCSSHFLLDFGNFTLTTMD
TRSEEQRQNLYSRFCISGRDIAAFFTDCGSDNQGCSLVMEDFTNQPILSPILEKADNVYSLIDR
CGMAVIVDQIKVPHPSYPSTRISIQVPNIGVHFSPTRYMRIMQLFDILYGAMKTYSQAPVDHMP
DGIQPWSPTDLASDARILVWKGIGNSVATWQSCRLVLSGLYLYTFESEKSLDYQRYLCMAGRQV
FEVPPANIGGSPYCLAVGVRGTDLKKALESSSTWIIEFQGEEKAAWLRGLVQATYQASAPLSGD
VLGQTSDGDGDFHEPQTRNMKAADLVITGALVETKLYLYGKIKNECDEQVEEVLLLKVLASGGK
IWTESYDRVLEFVKRSNAVSPTVALETAAVLQMKLEEVTRRAQEQLQIVLEEQSRFALDIDIDA
PKVRIPLRASGSSKCSSHFLLDFGNFTLTTMDTRSEEQRQNLYSRFCISGRDIAAFFTDCGSDN
QGCSLVMEDFTNQPILSPILEKADNVYSLIDRCGMAVIVDQIKVPHPSYPSTRISIQVPNIGVH
FSPTRYMRIMQLFDILYGAMKTYSQAPVDHMPDGIQPWSPTDLASDARILVWKGIGNSVATWQS
CRLVLSGLYLYTFESEKSLDYQRYLCMAGRQVFEVPPANIGGSPYCLAVGVRGTDLKKALESSS
TWIIEFQGEEKAAWLRGLVQATYQASAPLSGDVLGQTSDGDGDFHEPQTRNMKAADLVITGALV
ETKLYLYGKIKNECDEQVEEVLLLKVLASGGK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a