Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G48090_circ_g.22 |
ID in PlantcircBase | ath_circ_006247 |
Alias | Ath_circ_FC0687, Ath_circ_FC0688 |
Organism | Arabidpsis thaliana |
Position | chr1: 17749158-17751766 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT1G48090 |
Parent gene annotation |
calcium-dependent lipid-binding family protein |
Parent gene strand | - |
Alternative splicing | AT1G48090_circ_g.23 AT1G48090_circ_g.24 AT1G48090_circ_g.25 AT1G48090_circ_g.26 AT1G48090_circ_g.27 AT1G48090_circ_g.28 |
Support reads | 1 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G48090.3:10 AT1G48090.4:10 AT1G48090.6:10 AT1G48090.1:10 AT1G48090.5:10 AT1G48090.2:10 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.137153599 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
17751479-17749160(-) |
Potential amino acid sequence |
MKLEEVTRRAQEQLQIVLEEQSRFALDIDIDAPKVRIPLRASGSSKCSSHFLLDFGNFTLTTMD TRSEEQRQNLYSRFCISGRDIAAFFTDCGSDNQGCSLVMEDFTNQPILSPILEKADNVYSLIDR CGMAVIVDQIKVPHPSYPSTRISIQVPNIGVHFSPTRYMRIMQLFDILYGAMKTYSQAPVDHMP DGIQPWSPTDLASDARILVWKGIGNSVATWQSCRLVLSGLYLYTFESEKSLDYQRYLCMAGRQV FEVPPANIGGSPYCLAVGVRGTDLKKALESSSTWIIEFQGEEKAAWLRGLVQATYQASAPLSGD VLGQTSDGDGDFHEPQTRNMKAADLVITGALVETKLYLYGKIKNECDEQVEEVLLLKVLASGGK IWTESYDRVLEFVKRSNAVSPTVALETAAVLQMKLEEVTRRAQEQLQIVLEEQSRFALDIDIDA PKVRIPLRASGSSKCSSHFLLDFGNFTLTTMDTRSEEQRQNLYSRFCISGRDIAAFFTDCGSDN QGCSLVMEDFTNQPILSPILEKADNVYSLIDRCGMAVIVDQIKVPHPSYPSTRISIQVPNIGVH FSPTRYMRIMQLFDILYGAMKTYSQAPVDHMPDGIQPWSPTDLASDARILVWKGIGNSVATWQS CRLVLSGLYLYTFESEKSLDYQRYLCMAGRQVFEVPPANIGGSPYCLAVGVRGTDLKKALESSS TWIIEFQGEEKAAWLRGLVQATYQASAPLSGDVLGQTSDGDGDFHEPQTRNMKAADLVITGALV ETKLYLYGKIKNECDEQVEEVLLLKVLASGGKIWTESYDRVLEFVKRSNAVSPTVALETAAVLQ MKLEEVTRRAQEQLQIVLEEQSRFALDIDIDAPKVRIPLRASGSSKCSSHFLLDFGNFTLTTMD TRSEEQRQNLYSRFCISGRDIAAFFTDCGSDNQGCSLVMEDFTNQPILSPILEKADNVYSLIDR CGMAVIVDQIKVPHPSYPSTRISIQVPNIGVHFSPTRYMRIMQLFDILYGAMKTYSQAPVDHMP DGIQPWSPTDLASDARILVWKGIGNSVATWQSCRLVLSGLYLYTFESEKSLDYQRYLCMAGRQV FEVPPANIGGSPYCLAVGVRGTDLKKALESSSTWIIEFQGEEKAAWLRGLVQATYQASAPLSGD VLGQTSDGDGDFHEPQTRNMKAADLVITGALVETKLYLYGKIKNECDEQVEEVLLLKVLASGGK IWTESYDRVLEFVKRSNAVSPTVALETAAVLQMKLEEVTRRAQEQLQIVLEEQSRFALDIDIDA PKVRIPLRASGSSKCSSHFLLDFGNFTLTTMDTRSEEQRQNLYSRFCISGRDIAAFFTDCGSDN QGCSLVMEDFTNQPILSPILEKADNVYSLIDRCGMAVIVDQIKVPHPSYPSTRISIQVPNIGVH FSPTRYMRIMQLFDILYGAMKTYSQAPVDHMPDGIQPWSPTDLASDARILVWKGIGNSVATWQS CRLVLSGLYLYTFESEKSLDYQRYLCMAGRQVFEVPPANIGGSPYCLAVGVRGTDLKKALESSS TWIIEFQGEEKAAWLRGLVQATYQASAPLSGDVLGQTSDGDGDFHEPQTRNMKAADLVITGALV ETKLYLYGKIKNECDEQVEEVLLLKVLASGGK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017;Chen et al., 2017a |