Detail information of AT1G44910_circ_g.1


General Information
CircRNA Name AT1G44910_circ_g.1
ID in PlantcircBase ath_circ_006043
Alias NA
Organism Arabidpsis thaliana
Position chr1: 16977705-16978911  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene AT1G44910
Parent gene annotation Pre-mRNA-processing protein 40A
Parent gene strand +
Alternative splicing AT1G44910_circ_g.2 AT1G44910_circ_g.3 AT1G44910_circ_g.4 AT1G44910_circ_g.5 AT1G44910_circ_g.6 AT1G44910_circ_g.7 AT1G44910_circ_g.8 AT1G44910_circ_g.9
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   AG-CT
Number of exons covered AT1G44910.2:5
AT1G44910.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTGAATTTAACTGTTGTGCCTATCATAACAGAAAAGGCGATAATTTATCATCTCGGGGGGCAG
ATGATTCAAATGATGGAGCTACAGCACAAAACAATGaggtattattataacaagcggacaaagc
aatcaaattgggaaaaacctcttgaactgatgacaccacttgaggtaatacttacaaagtagtc
tgtcttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGGTATTATTATAACAAGCGGACAAAGCAATCAAATTGGGAAAAACCTCTTGAACTGATGACAC
CACTTGAGGTAATACTTACAAAGTAGTCTGTCTTCTAAGATGATTTTCATTTTACTGGTTGATT
AAGCTTACCAGGCTTTTAGTTGGTGTGCCACTTCACTAGTGATGTAAATGGTTGCAGCTTTGTC
TGGAACAACGTTGTTTAATTTGTATATTTTTTTCACTGATTCGGAAACTCCATAACTGTGGAGA
TATTTATTAAGACTGCTACGTGCTCATCTGAAAGCAGCTTTCACTTTATTGAAACAGGCTACCG
ATGCTTTTCTGTTTCTCATTTTTTTTTTTTTGTGTAAATCGGTGTCAACTTTGTAGGCAGTTTG
GGGATAATTTGCTAATTTTTTATGCTCGTTGGATTAAGAATCTCCTGATAATCCTTATTTCGTT
TTTATATTAAGATCAAATCTACCGTATCTATGCATGATTTTACAGTTTCTAAAATCTCTTTCTG
CAGAGGGCTGATGCATCCACTGTATGGAAGGAATTTACAACACCTGAAGGAAAGAAGTATGCAT
CTTTAAATTTCATTTAGTCTTTGTATCATGCTTATTCTCTATTGTTGCAACTGATTAGTTGTTT
TAATTTACGCAGATATTATTATAACAAGGTTACAAAGGAGTCTAAGTGGACAATTCCGGAAGAT
TTAAAGGTCTACCTATTTATCTCTCTCTCATGCACATTCCCCAATGCAAAGCCTATGTTAAACC
TGGGTAGTTGTTGTATGCAGTTAGCTCGGGAACAAGCCCAACTAGCTAGTGAAAAAACGTCCCT
TTCGGAAGCTGGATCTACCCCTCTATCCCACCATGCTGCATCCTCGTCTGATCTAGCAGTTAGC
ACTGTGACTTCTGTTGTTCCCAGCACATCTTCAGCACTTACTGGACATTCTTCAAGCCCTATTC
AAGCGGGTTTGGCTGTACCTGTCACCCGTCCTCCCTCTGTTGCTCCTGTTACTCCAACATCTGG
TGCAATTAGTGACACTGAGGCTACTACAATGTACTATTTTTCCTTGGGAAGTTTTGTTTGATGT
TTATACACTCTGTCAAGCCTTTGAATTTAACTGTTGTGCCTATCATAACAGAAAAGGCGATAAT
TTATCATCTCGGGGGGCAGATGATTCAAATGATGGAGCTACAGCACAAAACAATG
Conservation Information
Conserved circRNAs NA
PMCS 0.143948667
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017