Detail information of Os04g0507500_circ_g.6


General Information
CircRNA Name Os04g0507500_circ_g.6
ID in PlantcircBase osa_circ_024515
Alias NA
Organism Oryza sativa
Position chr4: 25357243-25359944  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0507500
Parent gene annotation Armadillo-like helical domain containing protein. (Os04t0507500-
01);Similar to OSIGBa0157A06.7 protein. (Os04t0507500-02)
Parent gene strand -
Alternative splicing Os04g0507500_circ_g.1 Os04g0507500_circ_g.2 Os04g0507500_circ_g.3 Os04g0507500_circ_g.4 Os04g0507500_circ_g.5 Os04g0507500_circ_g.7 Os04g0507500_circ_g.8 Os04g0507500_circ_g.9 Os04g0507500_circ_g.10 Os04g0507500_circ_g.11
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0507500-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGTTGCCACTGTACGTACAAACTCTTCCCGGACCCTCCAACTCTTGTGAGTCCATGCATAACT
TCCAGCTCTTTCAACTATGATTGTCGGCGAAGAAACctgttttacaatgctagaccgtcgatca
gacagctgagttgatagaggtggaaccaactgcttcaagagcataagaaaagatggataatcaa
tagcacct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 714
Transcript exons: 25357243-25357340,25357839-25358000,25358959-25359124,25
359470-25359538,25359632-25359694,25359789-25359944
CTGTTTTACAATGCTAGACCGTCGATCAGACAGCTGAGTTGATAGAGGTGGAACCAACTGCTTC
AAGAGCATAAGAAAAGATGGATAATCAATAGCACCTCCATACACCAAAGCTTCAATCCTTTGCA
TGGCAGCAATACGCACGGACCAGTCCTTTTCTGGAACAAGGGTAGCTGCAATCTTCTCAAACTC
CCGAAGTAATTCTTTCTCTGAGTGAACTCTTACTGGTTCCACTGGTTTTTCTGTTATATCCGTG
TCCCCTCCGAATAATGTACTTTCCCGTGGTGTGCTTTTTGTCCTTGGACTGCCTCTTTTCGGAT
TAACACTAACAGATCTAGATTCGACAGCCTTATATTGCATGATATTACCATCAGATGTGGGAAC
CTTTGGTTCTATTCTTTCCAATCTTGAATTTATCTCCCTTAGCATGTACGGAGGTAAGTTATGG
CGCTGCAACTCTTCATGGAACTGAGATCCCATATGTGTGTACATCTCCTCAATGCAATAGATAG
CAGCATCTCGAACACTTTGATTTGAATCATTCATCAATTGCAAGACAGGTGAAAGAAGAACTCG
TTGCAATGGGAGCTCGGTTGAAGCAAAAAGCCCAACCGCGGTTGCCACTGTACGTACAAACTCT
TCCCGGACCCTCCAACTCTTGTGAGTCCATGCATAACTTCCAGCTCTTTCAACTATGATTGTCG
GCGAAGAAAC

Genomic sequence CTGTTTTACAATGCTAGACCGTCGATCAGACAGCTGAGTTGATAGAGGTGGAACCAACTGCTTC
AAGAGCATAAGAAAAGATGGATAATCAATAGCACCTGACAAGATAAATAAAAACATTTTAAACT
ATCATACAGAATCATATTAGCAATCAATAAGGGGTTATCTGTTCATAATGAATGATATAGCTTT
GATATCAATATGAAGGCTTAAAGTGACAAATTTCAGTTGCATCATCAAGATTTTCAAGTCCATA
GTTCTTTTGTTGAACAAATATCACTAGATAGTGCTAATTTATTGAAGGGTGTTGCAGTGATTTC
CTAAAGACATAATTACCATTTATTTCACTTCACTGAAAATTTCAAGAGCATGAAATCAATTAGG
TTTGTTGCATAGTTATCAACAAAGGGACAGTGACAAAACGTTTACATCTACATCCTAGCAATGA
GGTATCATCTCTGGATAGAAATAACAGTTTCTAATTTGTACAATCAATACATGCTACGAAGTCT
CTGCACACAGTAATCATTAACGAGCATATTTGCACAAAACATAATCAAGGACAGTAGCATATGG
GTGAATTCAGAGCATCAAACCTCCATACACCAAAGCTTCAATCCTTTGCATGGCAGCAATACGC
ACGGACCAGTCCTTTTCTGGAACAAGGGTAGCTGCAATCTTCTCAAACTCCCGAAGTAATTCTT
TCTCTGAGTGAACTCTTACTGGTTCCACTGGTTTTTCTGTTATATCCGTGTCCCCTGTAAATGA
AAAAAAAAAAAGGTATAGTACACAAGGAACATAGTATATGTATCACAGGTGTGAAATATCAATC
ATAATTTGGATACAAATTTCAACATATTTGCTGGCAGAGGACCATTCACTTCTAAGAAAATACT
GGTTTATTGTGGTACATTGTATACTCAAGTGCTCGACAGAAGTTTCAGGAAAGACAGCTCAACC
ACATGCCTCCATATTGCATTAAATAAAAGTAGTGCTCCACTAAACCAAGAAAATATGTAAGAGC
ATTTGAACCGGCAAAAAATATATGCACATCAACATATGAAAGGGATCAAGGTTACAGATCATTT
TCATAAGAACTGGTATGCATGTAATAAGTATGTGGCACTGCGGTGTACCCTATGGCTGATAAGC
ATATAGAAATAGTAGCCCCACTAGATCTCAAATTTGTAGATGTGCTACAGGTTATGTCATAATA
TTATAGACAGTTGTCCATGTAGATTATTTTCTAAACAAATATATTTCATTGCTGTATTGCCAGA
TCATACCAATGTATCTGGAAAAAAAAAGAATCATATCTGGTCAAATAATCCCTGAAAGTAAACA
TTCTATTCAAGCCAATTATATTTCAGTGTCAGTACACACAATATAAATGTAACTCAAGAACTGG
AATTTGATTTTGCTGGCAAAGCTCAGAACTGCTAAGTGAGGGTATAAAATTAGCAACAAAAGTA
TGTTTTGTGCAGCTTCTTGATGACTGACTACACCTTACCATCATAGCATGGTAAAAGCGTTTAT
AGCATCTACAACTGTCCATCCAGATAAAGAGAGAGAACAGGAAGGGCATCTCCTGGTGACTAAG
AACAACCTAGATTTGCTTCAAGAAATCGCTTGTGCCAGTAATGTCCTAAATTGTCCCTGCTTGA
ATGAAAATATAGCGAAATGCCCATGCAAATTTCACTGGTACATAGAACTTACCTCCGAATAATG
TACTTTCCCGTGGTGTGCTTTTTGTCCTTGGACTGCCTCTTTTCGGATTAACACTAACAGATCT
AGATTCGACAGCCTTATATTGCATGATATTACCATCAGATGTGGGAACCTTTGGTTCTATTCTT
TCCAATCTTGAATTTATCTCCCTTAGCTGTGGACATCAAATAAAACAGATTAGGGTAATCTACA
CATACTCCTCGCATTTCTTCAAAAACATGGACCCATAAGAGCTCAACCATCCATGGTAATGCTA
CTACAAGCCTCCTACTCCAAAATTAAAACATTATAACAGTGTACTATGTCTATCACATTAAAAA
AGTGTCATAAAAACTGCCAAGGAAAACAAACAAAAACGTATGAACTGTGTGGTTTGCATAATAA
TAAAATAGATGATCATATAACCATGAAGAGGGATTTTTGCCCTCTGACTCTAGGGAGTAAAAGG
AGGTTGTAGTAAGACAAATAGGCACAATAACTAGATAACCAAATGTATTACCATGTACGGAGGT
AAGTTATGGCGCTGCAACTCTTCATGGAACTGAGATCCCATATGTGTGTACATCTCCTGCAGTC
AAACACAAACCATGAAACTGAGAGCAATATAAGTAGAAAAATATGAAAAGCATTAGCTGAATCA
TTTAGTTTGACGTCAGCTGACCTCAATGCAATAGATAGCAGCATCTCGAACACTTTGATTTGAA
TCATTCATCAATTGCAAGACCTGGAAAGCCAGAAAATCTTAGCAAGCCCATCTATTAAAGAAAT
AAAGTAGGAGCTCTCCACAGGAGAAATTACTAAATGAAGCCTAGACTTACAGGTGAAAGAAGAA
CTCGTTGCAATGGGAGCTCGGTTGAAGCAAAAAGCCCAACCGCGGTTGCCACTGTACGTACAAA
CTCTTCCCGGACCCTCCAACTCTTGTGAGTCCATGCATAACTTCCAGCTCTTTCAACTATGATT
GTCGGCGAAGAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.212084841
Functional Information
Coding potential Y
Potential coding position 25359684-25357245(-)
Potential amino acid sequence MNDSNQSVRDAAIYCIEEMYTHMGSQFHEELQRHNLPPYMLREINSRLERIEPKVPTSDGNIMQ
YKAVESRSVSVNPKRGSPRTKSTPRESTLFGGDTDITEKPVEPVRVHSEKELLREFEKIAATLV
PEKDWSVRIAAMQRIEALVYGGAIDYPSFLMLLKQLVPPLSTQLSDRRSSIVKQVSSPTIIVER
AGSYAWTHKSWRVREEFVRTVATAVGLFASTELPLQRVLLSPVLQLMNDSNQSVRDAAIYCIEE
MYTHMGSQFHEELQRHNLPPYMLREINSRLERIEPKVPTSDGNIMQYKAVESRSVSVNPKRGSP
RTKSTPRESTLFGGDTDITEKPVEPVRVHSEKELLREFEKIAATLVPEKDWSVRIAAMQRIEAL
VYGGAIDYPSFLMLLKQLVPPLSTQLSDRRSSIVKQVSSPTIIVERAGSYAWTHKSWRVREEFV
RTVATAVGLFASTELPLQRVLLSPVLQLMNDSNQSVRDAAIYCIEEMYTHMGSQFHEELQRHNL
PPYMLREINSRLERIEPKVPTSDGNIMQYKAVESRSVSVNPKRGSPRTKSTPRESTLFGGDTDI
TEKPVEPVRVHSEKELLREFEKIAATLVPEKDWSVRIAAMQRIEALVYGGAIDYPSFLMLLKQL
VPPLSTQLSDRRSSIVKQVSSPTIIVERAGSYAWTHKSWRVREEFVRTVATAVGLFASTELPLQ
RVLLSPVLQLMNDSNQSVRDAAIYCIEEMYTHMGSQFHEELQRHNLPPYMLREINSRLERIEPK
VPTSDGNIMQYKAVESRSVSVNPKRGSPRTKSTPRESTLFGGDTDITEKPVEPVRVHSEKELLR
EFEKIAATLVPEKDWSVRIAAMQRIEALVYGGAIDYPSFLMLLKQLVPPLSTQLSDRRSSIVKQ
(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017